Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00724
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily a...    69   3e-12
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    29   2.8  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    29   2.8  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   2.8  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    29   4.8  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 355 protein.
          Length = 141

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +2

Query: 245 FPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 424
           F   R++Q+ + ++++ ++ E  E   V+E ++ +E  +KCFR+    LVE TV +V+P+
Sbjct: 24  FKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPD 83

Query: 425 LISNYEQLPKAIQSLEDQLTQKGEEIN--KTLRNM 523
           L +N   L    + L DQL +KG+E+N  KT  N+
Sbjct: 84  LQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNI 118


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 389  LVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTM 556
            ++E T+  V  E +     + +  Q+ E ++ +KGEE  K  + + FA+ V ++TM
Sbjct: 2328 VIEETIIRV-DEQLEKKTTVIETEQASEVKMREKGEERRKEEKRVSFAAEVQEKTM 2382


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 389  LVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTM 556
            ++E T+  V  E +     + +  Q+ E ++ +KGEE  K  + + FA+ V ++TM
Sbjct: 1259 VIEETIIRV-DEQLEKKTTVIETEQASEVKMREKGEERRKEEKRVSFAAEVQEKTM 1313


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 389  LVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTM 556
            ++E T+  V  E +     + +  Q+ E ++ +KGEE  K  + + FA+ V ++TM
Sbjct: 7174 VIEETIIRV-DEQLEKKTTVIETEQASEVKMREKGEERRKEEKRVSFAAEVQEKTM 7228


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 437 YEQLPKAIQS---LEDQLTQKGEEI-NKTLRNMIFASNVADRTMPEPPPEQ 577
           Y QLP + Q    L     Q  EE+ N+ ++    A N+A    P PPP Q
Sbjct: 508 YMQLPNSNQRARILNTSSVQPSEEVRNRLVKIEAMAMNMAQLNPPRPPPPQ 558


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 437 YEQLPKAIQS---LEDQLTQKGEEI-NKTLRNMIFASNVADRTMPEPPPEQ 577
           Y QLP + Q    L     Q  EE+ N+ ++    A N+A    P PPP Q
Sbjct: 698 YMQLPNSNQRARILNTSSVQPSEEVRNRLVKIEAMAMNMAQLNPPRPPPPQ 748


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 260 YESLETSKDFLIRFFSYF*CIFSHFTLGR*GKWKSKF*EKI*YSF 126
           YE L T+K+F++ +F        +  + R  +WKSK    I  SF
Sbjct: 48  YELLWTTKNFILTYFFTLISTHEYLPINRIPEWKSKINGNIGPSF 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,768
Number of Sequences: 27780
Number of extensions: 345984
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)