Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00724
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22480.2 68416.m02842 prefoldin-related KE2 family protein si...    79   2e-15
At3g22480.1 68416.m02841 prefoldin-related KE2 family protein si...    79   2e-15
At2g42340.1 68415.m05240 expressed protein                             30   1.5  
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f...    30   1.9  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    29   4.5  
At2g37080.1 68415.m04550 myosin heavy chain-related low similari...    29   4.5  
At5g40450.1 68418.m04905 expressed protein                             28   7.9  
At3g58840.1 68416.m06558 expressed protein                             28   7.9  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    28   7.9  

>At3g22480.2 68416.m02842 prefoldin-related KE2 family protein
           similar to Swiss-Prot:Q9UHV9 prefoldin subunit 2
           (Protein HSPC231) [Homo sapiens]; contains Pfam domain,
           PF01920: KE2 family protein
          Length = 148

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/96 (38%), Positives = 64/96 (66%)
 Frame = +2

Query: 221 NE*GNLCWFPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVER 400
           NE   L  +   R+E  Q+ S I++L+M+++EH +VI  ++ ++ +RKCFRM GGVLVER
Sbjct: 15  NEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVER 74

Query: 401 TVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINK 508
           T+ EVLP +  N + L + ++ L + L +K +++ +
Sbjct: 75  TIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTE 110


>At3g22480.1 68416.m02841 prefoldin-related KE2 family protein
           similar to Swiss-Prot:Q9UHV9 prefoldin subunit 2
           (Protein HSPC231) [Homo sapiens]; contains Pfam domain,
           PF01920: KE2 family protein
          Length = 148

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/96 (38%), Positives = 64/96 (66%)
 Frame = +2

Query: 221 NE*GNLCWFPNFRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVER 400
           NE   L  +   R+E  Q+ S I++L+M+++EH +VI  ++ ++ +RKCFRM GGVLVER
Sbjct: 15  NEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVER 74

Query: 401 TVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINK 508
           T+ EVLP +  N + L + ++ L + L +K +++ +
Sbjct: 75  TIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTE 110


>At2g42340.1 68415.m05240 expressed protein
          Length = 349

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +2

Query: 395 ERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPE 574
           E   +E + + + +++ L + +  L + L     +I    +++I A   A +  P PPP 
Sbjct: 24  EANWSEKILDHVGDFKSLEEVVSKLTENLNLTESQIASIWKSLIKAEEEAQQVPPPPPPP 83

Query: 575 QSTSTKS 595
            +    S
Sbjct: 84  SAADVSS 90


>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 215

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -1

Query: 766 PAHLSSHTVIVLLIIKSFPVLPHTALGKCRTSLTVNTLRQL 644
           P H     + VLL  K+ PVL H   GK RT   V  LR+L
Sbjct: 127 PDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKL 167


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1165

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 404 VAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPEQ 577
           V E +P  +S  + L K + S   +L ++  EINK+   ++     + +TMP+ P  Q
Sbjct: 761 VLETIPTCVSELKTLQKLVLSGCSKL-KEFPEINKSSLKILLLDGTSIKTMPQLPSVQ 817


>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
           to myosin heavy chain [Rana catesbeiana] GI:4249701
          Length = 583

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
 Frame = +2

Query: 260 NEQRQLGSKISE------LQMELNEHKIVIETLRG-----VELTRKCFRMFGGVLVERTV 406
           NE ++L +++SE      L+MELNE   ++E LRG      E   +   +  G   +  +
Sbjct: 166 NEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEI 225

Query: 407 AEVLPELI-SNYEQLPKAIQSLEDQLTQKGEEINKTLRNMI 526
           A +  E++ S+  ++ +A  SL  +L Q   E+ ++L  ++
Sbjct: 226 ANLTLEMLRSDGMKMSEACNSLTTELEQSKSEV-RSLEQLV 265


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 395  ERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTMPEPPPE 574
            E T+ + LP   S  +Q P  +   +DQ  ++ EEI +            D    E  P+
Sbjct: 2054 ETTIDQTLPIGTSQADQTPSLVSDKDDQTPKQVEEILEEETKETHKVQAEDIFSTETVPK 2113

Query: 575  QSTSTKSNVLVASG 616
            +S       ++ASG
Sbjct: 2114 ESFIEAPVSMLASG 2127


>At3g58840.1 68416.m06558 expressed protein
          Length = 318

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
 Frame = +2

Query: 263 EQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVE--------RTVAEVL 418
           E R++  K  +L+ E    +I  E  R +E  +K   +    LV+        ++  ++ 
Sbjct: 169 EVREMEEKSKKLRSEEEMREIDDEKKREIEELQKTVIVLNLELVKNVEELKKWKSKKKLT 228

Query: 419 PELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASNVADRTM 556
            E +S  ++  K ++  +D+L +K EE NKT    +FA N  +RTM
Sbjct: 229 EEALSETQKREKELELKKDELLKKVEEGNKT----VFALN--ERTM 268


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +2

Query: 359 RKCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKTLRNMIFASN 538
           RK F   GG L +    EVL + + ++ Q   A+   ED++ QK   I +++ N      
Sbjct: 365 RKEFTAMGGYLTDS--GEVLLDRVEHFIQ---AVAVNEDKIFQKRTRIKQSMDNNEEMKQ 419

Query: 539 VADRTMPEPPPE 574
            + R   E PPE
Sbjct: 420 RSRRDPSEVPPE 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,389
Number of Sequences: 28952
Number of extensions: 318848
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)