Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00723
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.041
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 33 0.054
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.7
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 4.7
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 6.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 6.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 6.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.2
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.1 bits (72), Expect = 0.041
Identities = 27/63 (42%), Positives = 33/63 (52%)
Frame = +1
Query: 55 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 234
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 235 STP 243
STP
Sbjct: 470 STP 472
Score = 29.1 bits (62), Expect = 0.67
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 55 MPTKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 225
+P+ S TP S T T+ASS P+T++ ST T A S+ +S +S +T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335
Query: 226 TAW-STPTS 249
T+ STP S
Sbjct: 336 TSTSSTPLS 344
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 55 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 168
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 32.7 bits (71), Expect = 0.054
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 141 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWSK 260
+K I + +KS + ++ K+++ NK+N +E A Q WSK
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSK 171
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 538 SGLFELPTSNLITLSVHNLEVDLVVLPQRNE 446
SG +L N+ ++ +H+L L ++PQ N+
Sbjct: 1279 SGDIQLDDINITSIGLHDLRSRLAIIPQENQ 1309
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 707 AMRLPQVSVGLESTNASLYSRLYMKNKTSLSYLAGCRV 594
A+RLP + V + A + + +K K ++ ++AGCRV
Sbjct: 577 ALRLPPILVQRVTGEAIISAIFDIKAKRAVVHVAGCRV 614
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = -3
Query: 388 IVAVLIVQRQSETVALVHQLNVVFCEYKSELNREALPDDIFGALDH 251
I A LI QS+ A+V LN F KSE+ + IFG LD+
Sbjct: 802 IAAQLICIFQSK--AIVTSLNKSFMSPKSEVRIKVFTTLIFGQLDY 845
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 698 LPQVSVGLESTNASLYSRLYMKNKTSLSYLAG 603
LPQV++G S +A L +N+T L+ ++G
Sbjct: 65 LPQVNIGANSFSAETPVDLKKENETELANISG 96
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 48 SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 194
+L N S K++D L+ N L +HS K K+ YE S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 87 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 218
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,770
Number of Sequences: 5004
Number of extensions: 48570
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -