Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00723
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate...    28   7.7  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 51  LYANETSVSDSKLEDDLYNSILVADYDHSVEK--SKQIYE-DKKSEVITNVVNKLIRNNK 221
           +YA   S  D  LE DL+N   + +Y+H + K   +++++  KK E   NV+N+ I    
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377

Query: 222 MN 227
           ++
Sbjct: 378 VS 379


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 13  KPFKLFCVFSW------RLCMPTKPQ-SPTPNSKTIFTTASSLPITTIPLKRANRSTRTR 171
           KP+ + C F+        +C P+KP+ S T  + T  TT ++ P TT        +T T 
Sbjct: 59  KPYNIDCPFAIPPITFNAVCDPSKPKPSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPT- 117

Query: 172 RAKSSQMS*TNSYETTR*TAWSTP 243
              ++  + T +  TT  T  STP
Sbjct: 118 -TTTTTPTTTTTTPTTTTTTRSTP 140


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 42  VASLYANETSVSDSKLEDDLYNSILVADYDHSVE---KSKQIYEDKKSEV 182
           +  L  N++ +  S  E D Y     ADYD  +E   + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical
           protein Y73B3B.1 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 63  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 176
           + ++SD K+  DL +SI     DHS+ KS +  EDK S
Sbjct: 276 DPAISDGKVVLDLIDSIKPNVIDHSLVKSGKSNEDKMS 313


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 22  KLFCVFSWRLCMPTKPQSPTPN-SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS* 198
           ++ C +  R    T   +PT   + TI T+ +++  TT+   +A  +T+T  + ++    
Sbjct: 195 QIICKYCPRETTSTTTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPKFT 254

Query: 199 TNSYETTR*TAWSTPTS 249
           T + +TT+    ++PTS
Sbjct: 255 TTTIQTTK-KITTSPTS 270


>U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical
           protein F48E8.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 648 AIVHEEQNVVVVLSGLQGPLGLKSFDAVDPVGHVVMVRGCSN 523
           +++H E  VVVV  GL G     S D ++  G V++V G  N
Sbjct: 3   SVLHAEPTVVVVGGGLAGLSA--SLDIINGGGRVILVEGEGN 42


>AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical
           protein Y104H12BR.1 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 63  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 176
           + ++SD K+  DL ++I     DHS+ KS +  EDK S
Sbjct: 108 DPAISDGKVVLDLIDAIKPNVIDHSLVKSGKSNEDKMS 145


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  VFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLK 144
           V + R  +PT P+   P  +T  T AS L  T +P+K
Sbjct: 647 VSTQRAPVPTTPRPTAPAVQTTTTRASRLETTRVPVK 683


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 52  CMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 168
           C+PT+  +P        TT  S P TT+P+   N  + T
Sbjct: 14  CIPTQFVTPLNPGTITTTTTISAPTTTVPITTTNPVSTT 52


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +1

Query: 37  FSWRLC--MP--TKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TN 204
           + W+ C  +P  TKP + TP +    TT +++P TT     +  ST T  +  +  + T+
Sbjct: 246 YEWKKCGLVPETTKPTTTTPTT----TTTTTIPSTT----SSTTSTSTTTSVVTTTTVTS 297

Query: 205 SYETTR*TAWSTPTS 249
           + E T  T+ STPT+
Sbjct: 298 TTEPT--TSTSTPTT 310


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 67  PQSPTPNSKTIFTTAS-SLPITTIPLKRANRSTRTR 171
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


>AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate
           reductase protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 99  LYNSILV-ADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWSK 260
           +YNS++  AD  H      ++  D K  ++    N +     M+ + Y YQ+W K
Sbjct: 102 IYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENFNLVFEQFFMSNINYTYQIWKK 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,876
Number of Sequences: 27780
Number of extensions: 274896
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)