Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00722
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.88 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 723 LTLPFAISFLYYVHFFQTALFVKVSLFLNNNKVLFYFIICFLIL 592
           L L   I + YY+H      F+  ++ L     ++YF    +IL
Sbjct: 252 LLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIIL 295


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 728 YCTTFNGNKNKTDL 769
           Y   +NGN N TDL
Sbjct: 19  YKVMYNGNNNVTDL 32


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 699  FLYYVHFFQTALFVK--VSLFLNNNKVLFYFIICF 601
            FL  V  F  A  +    S + N   +LF+ ++CF
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIPILFFMLVCF 962


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 699  FLYYVHFFQTALFVK--VSLFLNNNKVLFYFIICF 601
            FL  V  F  A  +    S + N   +LF+ ++CF
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIPILFFMLVCF 962


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 699  FLYYVHFFQTALFVK--VSLFLNNNKVLFYFIICF 601
            FL  V  F  A  +    S + N   +LF+ ++CF
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIPILFFMLVCF 962


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 699  FLYYVHFFQTALFVK--VSLFLNNNKVLFYFIICF 601
            FL  V  F  A  +    S + N   +LF+ ++CF
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIPILFFMLVCF 962


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,679
Number of Sequences: 336
Number of extensions: 3452
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)