Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00722
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)                   29   3.1  
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)                     28   9.6  

>SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)
          Length = 301

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 181 SKLTNCIISPSSTHVFKYHFVAVKAKSAMC 92
           +KLTN  ++ SS H   YH+ A +   A C
Sbjct: 256 AKLTNSPLTDSSRHCLHYHYAATECFPACC 285


>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 324

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 161 HIPFIHSCLQISFRGCQSKICYVQKLYL*STSK--NIFV*NCEFLYQMKPIDKY 6
           H+ F H   +++ RG Q    ++Q  +   T K  N+FV  C++  + KPI ++
Sbjct: 97  HLSFAHQ--RVAHRGRQKTEKWIQDNFAEVTQKVINVFVQLCKYHAEQKPITRH 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,067,546
Number of Sequences: 59808
Number of extensions: 339717
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)