Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00722
         (771 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    27   0.64 
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    27   0.64 
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   2.0  
AF457562-1|AAL68792.1|   78|Anopheles gambiae hypothetical prote...    24   4.5  

>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -2

Query: 635 ITKCYSILLSVSLFYIIVQRVVIP 564
           +T C SIL+S+++F++++  ++ P
Sbjct: 277 VTLCISILVSLTVFFLLLAEIIPP 300


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -2

Query: 635 ITKCYSILLSVSLFYIIVQRVVIP 564
           I+ C SILLS+++F++++  ++ P
Sbjct: 271 ISLCISILLSLTVFFLLLAEIIPP 294


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 635 ITKCYSILLSVSLFYIIVQRVV 570
           I  C SILLS ++F++++  ++
Sbjct: 284 IALCISILLSQTMFFLLISEII 305


>AF457562-1|AAL68792.1|   78|Anopheles gambiae hypothetical protein
           15 protein.
          Length = 78

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 630 KVLFYFIICFLILYNSPTSRDSL 562
           KVL    +C L+L  +PT  D L
Sbjct: 11  KVLLVMAVCCLLLCTAPTGADPL 33


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,929
Number of Sequences: 2352
Number of extensions: 13110
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)