Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00722
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At3g10790.1 68416.m01299 F-box family protein contains F-box dom...    29   3.4  

>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1194

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 203  RVFFARFLKINKLYHIPFIHSCLQISFRGCQSKICYVQK 87
            R++F +  K+N+      +H+C+   F G Q   C++ +
Sbjct: 1013 RLYFPKCFKLNQEARDLIMHTCIDAMFPGTQVPACFIHR 1051


>At3g10790.1 68416.m01299 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 319

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 184 KRAKKTRVTCTLSSYITPSSHAIFKNSL 267
           K+ K   + CT++ Y+TP +  IF N +
Sbjct: 210 KQKKWRMIECTINHYLTPGTQGIFSNGV 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,609
Number of Sequences: 28952
Number of extensions: 247046
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)