Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00721
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    30   1.6  
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55...    29   5.0  

>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 277 LLTGSRFRSGGRFCEHGSC 333
           LL G+ FR  G++CEH  C
Sbjct: 169 LLVGNSFRGSGKYCEHAVC 187


>06_01_0065 +
           549972-550770,551577-552190,552392-552544,552769-552885,
           552972-553076,553269-553334,553430-553494,553577-553778,
           554026-554169,554212-554340
          Length = 797

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +2

Query: 110 RRAIQQLLHCVEIYNQQL--GGYNIGARSCQK 199
           RR + QL+ C++ Y+QQ+  G  ++G+ S +K
Sbjct: 309 RRIVTQLMTCMDEYHQQIGSGSGDVGSESAEK 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,451
Number of Sequences: 37544
Number of extensions: 307876
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)