Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00721
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical...    31   0.78 
At5g12170.1 68418.m01428 expressed protein similar to unknown pr...    30   1.8  

>At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical to
           GB:AAD51616 from [Arabidopsis thaliana]; similar to
           Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
           thaliana]; contains Pfam PF02441: Flavoprotein
          Length = 209

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 275 IFSLGRVSDPVVDSANTALASANVSNAARLEPRELTYTIRLCWHSLCHQ 421
           + SL  +   ++      LA  +  N A  EP  +  T+RL W S  HQ
Sbjct: 155 LLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRLFWESQAHQ 203


>At5g12170.1 68418.m01428 expressed protein similar to unknown
           protein (pir||T09909)
          Length = 276

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 196 LTTSCSNIIAAKLLIVYLNTVQQLLYSPAILSIYFIIVASI*CLAGHIANDLSRFDFTAI 17
           +T  C       LL V +N    + Y+ A+L +  I  A + CLA  ++  ++ F FT  
Sbjct: 171 ITKGCDGAPFLPLLFVIMN----IGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFTMP 226

Query: 16  LPYI 5
           LPY+
Sbjct: 227 LPYL 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,870
Number of Sequences: 28952
Number of extensions: 245433
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)