Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00720
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.81 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.7  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   5.7  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   10.0 
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    25   10.0 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   10.0 

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 307 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 450
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 253 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 119
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 355  DKSLHQLRTAMHHHPPNQERAVNLSILPV 269
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 221 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 123
           ST   ALP  PLSFS     P ++     PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 499 NLVRLEDAGPSKKNFNTSSVSCATRGRAHLNNDAYLAG 386
           N+ RL   G    NF+T+S    TR       D ++AG
Sbjct: 38  NIERLAKEGVRLTNFHTASACSPTRSMLLSGTDNHIAG 75


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 307 NQERAVNLSILPVSGPGEFP 248
           NQ+R +NL    + G GEFP
Sbjct: 227 NQDRFINLYSKELDGTGEFP 246


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 163 SMVAKLKLKGIDGRAPPGVEPAA*FDSTREIHQARTPEGLTD*QLFLD 306
           SM+AK K   ++   P     A  FD   ++  A   EG+ D  + LD
Sbjct: 265 SMMAKAKKNNVEVFLPVDFVTADKFDKDAKVGSATAEEGIPDGWMGLD 312


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 668 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 567
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,545
Number of Sequences: 5004
Number of extensions: 60438
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)