Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00720
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    31   0.64 
03_06_0189 + 32214702-32215154                                         29   2.6  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    29   4.5  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   4.5  
07_03_1107 - 24024387-24024497,24025799-24026410                       28   5.9  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   5.9  

>02_01_0190 +
           1276808-1278214,1278450-1278743,1278815-1279087,
           1279204-1279336,1279425-1279551,1279788-1280284,
           1280578-1280642,1280722-1280823,1281020-1281162,
           1281761-1281816,1282214-1282869,1282975-1283165,
           1283280-1283574,1283738-1283778,1284082-1284104,
           1284173-1284369,1284472-1284581,1285309-1285639,
           1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 27/87 (31%), Positives = 37/87 (42%)
 Frame = -1

Query: 356 RQIAPPTKNGHAPPPTESRKSC*SVNPSGVRAW*ISRVESN*AAGSTPGGALPSIPLSFS 177
           R  AP  K   +P P+  R +  S +PS   +  +SR  SN AA S+    LPS+   F 
Sbjct: 80  RAPAPSPKPSPSPSPSPRRST--SASPSATLSSLVSRTFSNNAASSSSSKPLPSL---FR 134

Query: 176 FATILPPESKIFGFPEAARRAIVVTSA 96
                P          AA RA++   A
Sbjct: 135 GVRPSPKPGAALAAAAAASRAVLTPHA 161


>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 123
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 630 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGITDLY 505
           PQ P    F GLP  +G  +H D  ++A   P  S  ++  Y
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLSMQLSHGY 318


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 656  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 564
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 633 KPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGITDLYCSIS 493
           K ++PA  S +  PGP G G  ADS +       +S+    L CS S
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADSTACPICDVFSSRCAAYLDCSCS 225


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 589 PGQPAETPSCWGLGFAIIPHKRGIPSKR 672
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,204,807
Number of Sequences: 37544
Number of extensions: 512791
Number of successful extensions: 1390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)