Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00720
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen pro...    28   5.3  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   7.0  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 207 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 103
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen
           protein 112 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -3

Query: 645 GDNCKPQSPARRSFSGLPG-PLGQGEHADSFSVARVRPRTSKGITDLYCSISCG 487
           G N +P  P  +  SG PG P   G    +    +      KGI   YC+I  G
Sbjct: 235 GQNGQPGQPGPKGPSGQPGQPGSDGNPGPAGQAGQAGSVGEKGICPKYCAIDGG 288


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -3

Query: 642 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 547
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 668 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 567
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,769
Number of Sequences: 27780
Number of extensions: 378356
Number of successful extensions: 1075
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)