Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00720
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.70 
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    28   5.0  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   6.6  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   6.6  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   8.7  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 642 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 514
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 672 ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGI 517
           AL +  SF GDN  PQS   +++   P     G H       + +PR   G+
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHHFAVVRTTKGKPRRYNGV 190


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 511 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 660
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 177 LCNHTPPGVQNLWFPGSCPP 118
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 26  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 136
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,085
Number of Sequences: 28952
Number of extensions: 357469
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)