Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00718
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     28   1.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.5  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   9.5  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   9.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.5  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 673 IRLTIFASMQLCVPV*RNRKPYSDTVECPTSCLKVNSRIDVSVSMYYPTLVSH 515
           + + +++  QL  PV  N  P    +EC T+CL V S+I+ +   +   L++H
Sbjct: 61  LAMLLYSRFQLFFPV--NEIPL---LECATACLVVASKIEDTAKKFRDILLAH 108


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 711 WSCYHFINLIFPSYA*LFLPQCNYAFRF 628
           W+C HF  +IFP+   +    C Y F F
Sbjct: 116 WTCLHFSKIIFPAQKVI----CLYIFLF 139


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 711 WSCYHFINLIFPSYA*LFLPQCNYAFRF 628
           W+C HF  +IFP+   +    C Y F F
Sbjct: 116 WTCLHFSKIIFPAQKVI----CLYIFLF 139


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 711 WSCYHFINLIFPSYA*LFLPQCNYAFRF 628
           W+C HF  +IFP+   +    C Y F F
Sbjct: 88  WTCLHFSKIIFPAQKVI----CLYIFLF 111


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 711 WSCYHFINLIFPSYA*LFLPQCNYAFRF 628
           W+C HF  +IFP+   +    C Y F F
Sbjct: 116 WTCLHFSKIIFPAQKVI----CLYIFLF 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,122
Number of Sequences: 5004
Number of extensions: 66970
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)