Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00718
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0097 - 8285425-8286090                                           30   1.9  
11_02_0093 - 8238947-8239615                                           30   1.9  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    30   1.9  
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428...    29   5.7  
10_06_0019 - 9688395-9688867,9688905-9689070                           28   7.5  

>11_02_0097 - 8285425-8286090
          Length = 221

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 793 IGPEDLTSINI---CSVTNQKKPCQQSFQQVVLLSFYKSY 683
           +GP+DL  + +   CSV N  +PC+ S +Q +  +F K +
Sbjct: 175 LGPDDLDGLMMSCKCSVDNDDEPCKSSTRQSLKEAFRKHF 214


>11_02_0093 - 8238947-8239615
          Length = 222

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 793 IGPEDLTSINI---CSVTNQKKPCQQSFQQVVLLSFYKSY 683
           +GP+DL  + +   CSV N  +PC+ S +Q +  +F K +
Sbjct: 176 LGPDDLDGLMMICKCSVDNDDEPCKSSTRQSLKEAFRKHF 215


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 596 DCIT-IWLSVSSNRNA*LH*GKNSQAYDGKIRFIK 697
           DCI  IW  +    ++ LH G N Q YD KI  IK
Sbjct: 276 DCIVRIWQIMEVEASSKLHGGDNPQNYDDKITIIK 310


>01_06_0931 -
           33139383-33139580,33139748-33139870,33142520-33142891,
           33143380-33143450,33143769-33143810,33143895-33143967,
           33144518-33144679,33144778-33144878,33144992-33145114,
           33145296-33145689
          Length = 552

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 135 LALLKSMGDGNH*RSGEPYAR-LPTRAIKYKINERSDEPFRSG 10
           LALL  MGDG+H +S  PY   L  R ++    +  + P R G
Sbjct: 466 LALLMKMGDGSHVKS--PYVTYLKVRCLRLSPGQLVENPKRGG 506


>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 793 IGPEDLTSINI---CSVTNQKKPCQQSFQQVVLLSFYKSY 683
           +GP+DL  + +   CSV N  +PC+   +Q +  +F K +
Sbjct: 166 LGPDDLHGLMMICKCSVDNDDEPCKSGTRQNLKEAFRKQF 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,562,381
Number of Sequences: 37544
Number of extensions: 420327
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)