Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00718
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07) 60 2e-09
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_45034| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 38 0.009
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_32328| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_17256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08) 29 5.8
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 28 7.6
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031) 28 7.6
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 28 7.6
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 28 7.6
>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
Length = 530
Score = 60.5 bits (140), Expect = 2e-09
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 265 TVDKICSMFLGNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWNR-*PLSLRKSLILAC 441
T+ I + G T H GF GSTTN G I L+ Y GLWA+DGW+ + + SLI C
Sbjct: 267 TITGIVELCRGKTEHFQNGFSGSTTNIGQIGLAFYIGLWAFDGWDMPRAIIIGISLITVC 326
Query: 442 EYCIDSHYV 468
I+ Y+
Sbjct: 327 YLLINVAYI 335
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 52.8 bits (121), Expect = 3e-07
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 295 GNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
G T +L FEGS T+P I + Y GLWAYDGWN
Sbjct: 214 GKTENLQNAFEGSETDPAKIGFAFYIGLWAYDGWN 248
>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 289 FLGNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWNR 402
F G+T + F+G++TN G +A + Y GLWA+DGWN+
Sbjct: 187 FSGHTKNFQDLFKGTSTNLGKLAHAFYSGLWAFDGWNQ 224
>SB_45034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 307 HLNKGFEGSTTNPGSIALSLYYGLWAYDG 393
+L FE ST NP +I L+ Y GLWAYDG
Sbjct: 5 YLEDPFEKSTPNPAAIGLAFYSGLWAYDG 33
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 292 LGNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+G+ S FEGS T G + + Y L++YDGWN
Sbjct: 616 MGHVSSFADVFEGSETRVGLVGFAFYNALFSYDGWN 651
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 36.3 bits (80), Expect = 0.029
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 301 TSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
T + F+GS T+ + L+ GLWAY GWN
Sbjct: 332 TGAFGQPFKGSVTDVSQLGLAFQSGLWAYAGWN 364
>SB_32328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 96 VSDYRRPWTSAMPAA 140
V D RRPWT+A+PAA
Sbjct: 23 VEDSRRPWTAAVPAA 37
>SB_17256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 364 LYYGLWAYDGWNR*PLSLRKSLILAC 441
LY+ +WA GWNR ++ +LAC
Sbjct: 78 LYFDVWAVHGWNRNIYLIQCFRVLAC 103
>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
Length = 386
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/101 (25%), Positives = 44/101 (43%)
Frame = +1
Query: 43 YFIFYCPCRQTRIRLT*SLVITVAHGLQQCQRQGQAADNA*YSPQTSLEGRKEEGHVIAL 222
YFI T + S+++T+ Q +++G+A D P+ EG + +G
Sbjct: 229 YFIVLIMIAITGFFILASIILTIKRFCQGLKKEGEAFDAL---PE---EGDEADGGF--- 279
Query: 223 GKTRLFQPRGSKSYTVDKICSMFLGNTSHLNKGFEGSTTNP 345
K+ L + K Y + + +GN SH+ EG NP
Sbjct: 280 -KSFLQFLQRDKDYELVTVTKGVMGNYSHIGVRLEGGLDNP 319
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 675 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 715
>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
Length = 313
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 74 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 114
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 1038 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 1078
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 74 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 114
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 301 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 341
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 243 LKQARFPERYDMSFFLPSFKRGLWRVLSVISGLTLPLALLK 121
L+ FP+ +++ F +P FK+G ++ G+TL L K
Sbjct: 74 LRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSK 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,394,939
Number of Sequences: 59808
Number of extensions: 511251
Number of successful extensions: 1092
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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