Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00718
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid tran... 50 3e-06
AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid tr... 42 5e-04
Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical pr... 38 0.011
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 36 0.025
AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid tr... 34 0.14
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 34 0.14
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 34 0.14
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 29 2.9
Z83319-5|CAB05907.2| 446|Caenorhabditis elegans Hypothetical pr... 28 6.7
>U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid
transporter protein 4 protein.
Length = 526
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +1
Query: 286 MFLGNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+F G T +L FEGS TNPG I+L+ Y LW++ GW+
Sbjct: 195 IFKGQTEYLEHPFEGSNTNPGQISLAFYGALWSFAGWD 232
>AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid
transporter protein 7 protein.
Length = 506
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 286 MFLGNTSHLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+F T + F GS NPG++ L +Y GL+AY+GW+
Sbjct: 189 IFKQQTQNFKNSFTGSDWNPGNLVLGVYSGLFAYNGWD 226
>Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical
protein T11F9.4 protein.
Length = 523
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 307 HLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+L + F+GS NPG +L+ GL++YDGW+
Sbjct: 200 NLEEPFKGSNWNPGPFVNALFAGLFSYDGWD 230
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 286 MFLGNTSHLNKG--FEGSTTNPGSIALSLYYGLWAYDGW 396
+F G TSH +GS N G+IAL++Y G WA+ G+
Sbjct: 184 IFRGATSHYRSSEIMKGSDWNAGAIALAIYQGNWAFGGF 222
>AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid
transporter protein5, isoform c protein.
Length = 278
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 307 HLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+L +GS G++ L Y GLWA+ GW+
Sbjct: 189 YLENPMQGSKYGTGNLILGFYGGLWAFSGWD 219
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 307 HLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+L +GS G++ L Y GLWA+ GW+
Sbjct: 189 YLENPMQGSKYGTGNLILGFYGGLWAFSGWD 219
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 307 HLNKGFEGSTTNPGSIALSLYYGLWAYDGWN 399
+L +GS G++ L Y GLWA+ GW+
Sbjct: 189 YLENPMQGSKYGTGNLILGFYGGLWAFSGWD 219
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 322 FEGSTTNPGSIALSLYYGLWAYDGWN 399
FE ++ + ++L+ Y GL+AY GWN
Sbjct: 216 FENTSQDFTKVSLAFYSGLFAYSGWN 241
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 322 FEGSTTNPGSIALSLYYGLWAYDGWN 399
FE + + + +L+ Y GL+AY GWN
Sbjct: 216 FENTAKDLETASLAFYSGLFAYQGWN 241
>Z83319-5|CAB05907.2| 446|Caenorhabditis elegans Hypothetical
protein T02D1.4 protein.
Length = 446
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 279 YFINCIGFRASWLKQARFPERYDMSFFLPSFKRGL 175
YF+N GF A WL E Y + F PS + L
Sbjct: 170 YFVNLFGFCAMWLTVLMTAECY-LHVFFPSHSKSL 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,371
Number of Sequences: 27780
Number of extensions: 378172
Number of successful extensions: 755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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