Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00718
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28925.1 68416.m03612 hypothetical protein                          29   4.7  
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein...    28   8.3  

>At3g28925.1 68416.m03612 hypothetical protein
          Length = 247

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 107 PSPMDFSNASGRVRPLITLNTLHKPRLKEGRKKDMS*RSGKRACFNH 247
           P+P     ++  ++ L +++  HK R +  R +++S   G+++C NH
Sbjct: 10  PNPKKIDESNKELKELESVHVKHKKRQEMLRNRELS-DKGRKSCSNH 55


>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
           similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
           esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
           thaliana}
          Length = 631

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 180 GLWRVLSVISGLTLPLALLKSM--GDGNH*RSGEPYARLPTR 61
           G WR  + + G    L L++ +  G+ N  R  E Y+R PTR
Sbjct: 527 GQWRKFAHVIGFIPMLLLMRCVHRGNSNKNRGSEGYSRQPTR 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,862
Number of Sequences: 28952
Number of extensions: 345260
Number of successful extensions: 709
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)