Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00717
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              138   5e-33
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)                28   5.7  
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                28   5.7  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    28   5.7  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  27   9.9  
SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)          27   9.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  138 bits (333), Expect = 5e-33
 Identities = 61/85 (71%), Positives = 74/85 (87%)
 Frame = +2

Query: 5   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 184
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 185 HSRARVRKNTEARRKGRHCGFGKKE 259
           HSRARVRK  EAR KGRH G GK++
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRK 110



 Score =  128 bits (308), Expect = 5e-30
 Identities = 59/86 (68%), Positives = 67/86 (77%)
 Frame = +1

Query: 256 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 435
           +GTANARMPQK +W                AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169

Query: 436 IHRKKAEKARTKMLSDQAEARRNKGR 513
           IH+KKAEKAR+K+LSDQAEARRNK +
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNKNK 195


>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 320 LKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 174
           L+ LC C HS+  G   L   L Y  HS     +L   LC+ GH    G++LL+
Sbjct: 91  LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 343 FCTSGAIFLKPFVFVPIV--PSVAYAHWLYLFLTKATVTTLSTCFCVFADTSAGVYCYRF 170
           +CT   I+++P         P V ++     +  + TV+T  T    F  T+ G+Y    
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293

Query: 169 LDDETILDHLTDVL 128
             ++ I+  +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 119 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCGFGKKEVQ 265
           +S  NIRK IKDG   K   P    S  +VRK +  RR   +    KK  Q
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQ 145


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 439 HRKKAEKARTKMLSDQAEARRNKGRRHASAARNVLPPRRRNCCRPSLEKTKPRYR*EVNT 618
           H+K+A    T+   +Q      K R+H   AR     RRR+  +P  E    +++ +  T
Sbjct: 356 HQKRARIKNTRRRQEQKTPEEGKNRKHQKRAR-TKNTRRRHQQKPPEEGKNKKHQKKATT 414


>SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 350 LAVLYFRSNFLKTLCLCTHSSFCGIRALAVPLSYQSHSDDPF 225
           LA+  FR  F +  C+   +S C I   A+  + + HSD+ +
Sbjct: 190 LAISAFRDQFKEMSCINKLTSVCVIALTALTTTRKRHSDNEY 231


>SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)
          Length = 202

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 347 AVLYFRSNFLKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVLLCFCGHERGSVLLQVS 168
           AV   +       C+    S CGI  +A   +  +     F   +C+C  E G++ L +S
Sbjct: 91  AVTSIKQELTNPYCIGVPYSSCGICGVAGSGNVSTSQCSAFGENMCYCSREAGTLYLLLS 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,183,337
Number of Sequences: 59808
Number of extensions: 423593
Number of successful extensions: 1328
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)