Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00717
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   124   4e-29
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    41   9e-04
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  124 bits (300), Expect = 4e-29
 Identities = 52/81 (64%), Positives = 71/81 (87%)
 Frame = +2

Query: 14  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 193
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 194 ARVRKNTEARRKGRHCGFGKK 256
            R R+  EARRKGRH G+GK+
Sbjct: 61  FRAREYEEARRKGRHTGYGKR 81



 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/86 (54%), Positives = 59/86 (68%)
 Frame = +1

Query: 256 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 435
           RGTANARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EY
Sbjct: 82  RGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEY 141

Query: 436 IHRKKAEKARTKMLSDQAEARRNKGR 513
           I +KK E  R K L+DQA+ARR+K +
Sbjct: 142 IFKKKTENKRAKQLADQAQARRDKNK 167


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 325 IFLKPFVFVPIVPSVAYAHWLYLFLTKA-TVTTLSTCFCVFADTSAGVYCYRFLDDETIL 149
           IF++PF    IV    +  W   FL  A  +  ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 148 DHLTDVLSGVGVCDLIDFI 92
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 558 PPSWRQYVPRGACVPPSFIAAGLSL 484
           P SW QY P+G C+ P  + A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 110  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 244
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 292 VPSVAYAHWLYLFLTKATVTTLSTCFCVF 206
           +PS+  + WL++F+    + TL  C C++
Sbjct: 214 LPSILQSKWLWIFVIGIVLPTLCCCCCIY 242


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 511 RRHASAARNVLPPRRRNCCRPSLEKTK 591
           RRHAS     +PP   NC +P+ ++T+
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTR 40


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 122 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 235
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 65   GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG-RHC 241
            G    W++PN   ++  T  + N+   I   + I K + +    R+  + +  +   R  
Sbjct: 1159 GYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLYMSNDLTKDAVRFE 1218

Query: 242  GFGKKEVQPMR 274
            G+G ++V P +
Sbjct: 1219 GYGTQKVSPKK 1229


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 373 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKGRRHASAARN 537
           H     A+ N  K + V++   H+KKA      +    A ARRN  +R A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 283 VAYAHWLYLFLTKATVTTLSTCFCVFADTSAGVYC 179
           + +AH+LY ++     T LS+CF  +    +  YC
Sbjct: 118 ILHAHFLYRYMVLFRSTFLSSCFIPYGIICSVSYC 152


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 362 LSIFLAVLYFRSNFLK 315
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,028
Number of Sequences: 27780
Number of extensions: 309339
Number of successful extensions: 956
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)