Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00717
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.63 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.63 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 541 LPPRRRNCCRPSLEKTKPR 597
           + PR++NCCR  L K   R
Sbjct: 393 MQPRKKNCCRSWLSKFPTR 411


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 541 LPPRRRNCCRPSLEKTKPR 597
           + PR++NCCR  L K   R
Sbjct: 393 MQPRKKNCCRSWLSKFPTR 411


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  QDEFPQAAEEACSLCYAMW*KEG 78
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 409  KNKRVLMEYI-HRKKAEKARTKMLSDQAEARRNKGRRHASAARNVLPP 549
            K+ R + ++I H   +  +    +S+Q    R +GR   S+ R +LPP
Sbjct: 1809 KHIRAVSDFIYHGTSSTSSDISPMSEQKSLPR-RGRSSRSSLRTLLPP 1855


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 409  KNKRVLMEYI-HRKKAEKARTKMLSDQAEARRNKGRRHASAARNVLPP 549
            K+ R + ++I H   +  +    +S+Q    R +GR   S+ R +LPP
Sbjct: 1805 KHIRAVSDFIYHGTSSTSSDISPMSEQKSLPR-RGRSSRSSLRTLLPP 1851


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 RCLSIFLAVLYFRSNFLKTLCLC 300
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,350
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)