Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00716
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   150   2e-37
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   150   2e-37
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    47   2e-06
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   3.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.0  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   6.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.6  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   6.6  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  150 bits (363), Expect = 2e-37
 Identities = 73/104 (70%), Positives = 81/104 (77%)
 Frame = +2

Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
           PF      KG    +     KQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDE
Sbjct: 40  PFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDE 99

Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           VL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 31/48 (64%), Positives = 40/48 (83%)
 Frame = +3

Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVE   P
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQP 62


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  150 bits (363), Expect = 2e-37
 Identities = 73/104 (70%), Positives = 81/104 (77%)
 Frame = +2

Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
           PF      KG    +     KQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDE
Sbjct: 40  PFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDE 99

Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           VL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 31/48 (64%), Positives = 40/48 (83%)
 Frame = +3

Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVE   P
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQP 62


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 35/89 (39%), Positives = 52/89 (58%)
 Frame = +2

Query: 185 MEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 364
           +EG PFR     +G   R    + K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +
Sbjct: 45  LEGSPFR-----RGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQ 96

Query: 365 ENDEVLVAGFGRKGHAVGDIPGVRFKVVK 451
           E+  VL+ G GR      D PGV++ VV+
Sbjct: 97  EHAVVLLRG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 387 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMAELGCLVLHQLS 238
           ++S S F S+WFRQ +       AVT+F   MS    HL  A    ++L  +S
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIIS 206


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 248 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 78
           ++F +D++ C  CT   V+LP       LE F  PS    V H++ A  +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 149 RPSLFTTVVHVLRAVRIPRGLPIWIARHQSATDGKRN 39
           +PSL   ++ +L++V+  R    ++ +H S  DG  N
Sbjct: 3   KPSLSQDLIWILKSVQSRRSTKGFLQKHSSLKDGSPN 39


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 447 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 337
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 144 WADKEFKKAHMGTKWKANPFGGASHAKGIV 233
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
 Frame = -2

Query: 617 FFFLLYTIFIMY*DFTFYELINNALPDS---RSLITMYTLILV-APFSLCRERGETRWLL 450
           + F  +TIFI+Y +  +Y +  +A+  S    +L +  T++L   P S+  +  ET   L
Sbjct: 147 WLFFGFTIFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTMLLTELPNSVLNDE-ETLHEL 205

Query: 449 LPP*NELRECHRRRDLYDRIPPLVLRRFLRCGLGNRHGGRMRSLSFRS 306
            P  +E   C   RDL  ++   V +   R  LGN++   + SL  +S
Sbjct: 206 FPNASEF-TC--VRDL-KKLEKKVKK---RSDLGNKYESTLNSLINKS 246


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 505 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 383
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 248 CRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 367
           C    P +A   C+    IK    +T+ +PR+  +NH  E
Sbjct: 27  CGVPTPPNAAAMCM--DCIKMTTDITSGIPRESTVNHCRE 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,606
Number of Sequences: 5004
Number of extensions: 58902
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)