Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00716
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 161 3e-40
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 161 3e-40
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 76 2e-14
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
04_01_0440 + 5746474-5746662,5746895-5747251 30 1.7
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 3.9
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 28 5.2
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 5.2
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 28 5.2
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 27 9.0
01_01_0357 - 2816650-2817897 27 9.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 161 bits (392), Expect = 3e-40
Identities = 77/104 (74%), Positives = 84/104 (80%)
Frame = +2
Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
PF KG + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDE
Sbjct: 39 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 98
Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +3
Query: 126 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+E P
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 61
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 161 bits (392), Expect = 3e-40
Identities = 77/104 (74%), Positives = 84/104 (80%)
Frame = +2
Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
PF KG + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDE
Sbjct: 209 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 268
Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 269 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 159 bits (386), Expect = 2e-39
Identities = 76/105 (72%), Positives = 83/105 (79%)
Frame = +2
Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
PF KG + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDE
Sbjct: 39 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 98
Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRSR 511
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P R
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPSRR 143
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +3
Query: 126 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+E P
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 61
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +3
Query: 126 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+E P
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 231
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +3
Query: 126 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+E P
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = +2
Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
PF KG + KQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+
Sbjct: 110 PFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEV 169
Query: 377 VLVAG 391
V G
Sbjct: 170 AYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 371 DEVLVAGFGRKGHAVGDIPGVRFKVVK 451
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 71 VLSKWVNPEEYERRVTREPPS*T--AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 238
VL K + + + VT + T A+GG P GY+ +G PF C KG+ PR
Sbjct: 101 VLEKLMKKHQLDAIVTPNSDASTIFAIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 420 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 310
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 129 GGSRVTRRSYSSGFTHLDSTTPIGYG 52
GGS ++ SG + LD T+P GYG
Sbjct: 437 GGSIYGDTTWRSGSSELDGTSPFGYG 462
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 402 LRPNPATSTSSFSSMWFRQPSRGT 331
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 129 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSPTLPSANASVYS 299
R EQRW +E + ++W+A + + L VE LPS +A+V S
Sbjct: 127 REEQRWLREEQRWLREESRWRAERESLLAEIAALRLRLGTVEAGPLPLPSVDAAVAS 183
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 613 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCT 512
+FCC QY + I HF TR + ++ + T
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKIT 76
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 419 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 333
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,841
Number of Sequences: 37544
Number of extensions: 429053
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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