Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00716
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              172   2e-43
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              123   1e-28
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         34   0.11 
SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   5.3  
SB_17589| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  172 bits (419), Expect = 2e-43
 Identities = 80/97 (82%), Positives = 88/97 (90%)
 Frame = +2

Query: 218 RKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFG 397
           R+  R +E     KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFG
Sbjct: 47  RRRRRQQEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFG 106

Query: 398 RKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           R+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 107 RRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/86 (66%), Positives = 66/86 (76%)
 Frame = +2

Query: 176 GYEMEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 355
           G  ++  PF      KG    +     KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN
Sbjct: 32  GTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN 91

Query: 356 HIEENDEVLVAGFGRKGHAVGDIPGV 433
           +IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 92  YIEENDEVLISGFGRRGHAVGDIPGI 117



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +3

Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVE   P
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVP 337
           + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 240 KPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 96  SGFTHLDSTTPIGYGWEKKLIG 31
           SGF + D  T  G GWE K+ G
Sbjct: 294 SGFVYPDGQTMFGLGWEMKISG 315


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 235  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 140
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_17589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 96 SGFTHLDSTTPIGYGWEKKLIG 31
          SGF + D  T  G GWE K+ G
Sbjct: 11 SGFVYPDGQTMFGLGWEMKISG 32


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 167 SPHGYEMEG*PFRWCISRKGHRPRESWC 250
           S HG  MEG P  W +S  G  P+ S C
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQC 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,971,280
Number of Sequences: 59808
Number of extensions: 487907
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)