Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00716
(618 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 170 3e-42
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 170 3e-42
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 170 3e-42
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 9e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 46 1e-04
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 46 1e-04
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 46 1e-04
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 46 1e-04
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 46 1e-04
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 46 1e-04
BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthas... 30 5.7
BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein. 30 5.7
AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein. 30 5.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 170 bits (414), Expect = 3e-42
Identities = 85/111 (76%), Positives = 89/111 (80%)
Frame = +2
Query: 176 GYEMEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 355
G ++ PF KG + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN
Sbjct: 33 GTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN 92
Query: 356 HIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 93 FIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 85.8 bits (203), Expect = 1e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVE P
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 170 bits (414), Expect = 3e-42
Identities = 85/111 (76%), Positives = 89/111 (80%)
Frame = +2
Query: 176 GYEMEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 355
G ++ PF KG + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN
Sbjct: 33 GTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN 92
Query: 356 HIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 93 FIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 85.8 bits (203), Expect = 1e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVE P
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 170 bits (414), Expect = 3e-42
Identities = 85/111 (76%), Positives = 89/111 (80%)
Frame = +2
Query: 176 GYEMEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 355
G ++ PF KG + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN
Sbjct: 33 GTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN 92
Query: 356 HIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 93 FIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 85.8 bits (203), Expect = 1e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +3
Query: 123 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVE P
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 62
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 9e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +2
Query: 329 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 505
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 251 RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 430
+ K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 431 VRFKVVK 451
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae) protein.
Length = 661
Score = 30.3 bits (65), Expect = 5.7
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 13/55 (23%)
Frame = +2
Query: 236 RESWCRTKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VPRDGCLNHI 361
RE W +TK P +A+RK CV QL+ K G K V+AF +PR+ L +I
Sbjct: 422 REEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYI 476
>BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein.
Length = 311
Score = 30.3 bits (65), Expect = 5.7
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 13/55 (23%)
Frame = +2
Query: 236 RESWCRTKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VPRDGCLNHI 361
RE W +TK P +A+RK CV QL+ K G K V+AF +PR+ L +I
Sbjct: 72 REEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYI 126
>AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein.
Length = 645
Score = 30.3 bits (65), Expect = 5.7
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 13/55 (23%)
Frame = +2
Query: 236 RESWCRTKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VPRDGCLNHI 361
RE W +TK P +A+RK CV QL+ K G K V+AF +PR+ L +I
Sbjct: 406 REEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYI 460
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,391,263
Number of Sequences: 237096
Number of extensions: 2228979
Number of successful extensions: 5117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5117
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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