Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00716
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   163   1e-40
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    38   0.008
Z75539-3|CAA99845.1|  228|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z75531-13|CAA99808.1|  228|Caenorhabditis elegans Hypothetical p...    28   4.6  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    28   6.1  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  163 bits (395), Expect = 1e-40
 Identities = 79/119 (66%), Positives = 91/119 (76%)
 Frame = +2

Query: 152 QRIQESPHGYEMEG*PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAF 331
           +R +++  G   +  PF      KG    +     KQPNSAIRKCVRVQLIKNGKK+TAF
Sbjct: 25  KRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84

Query: 332 VPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           VP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 85  VPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 36/47 (76%), Positives = 42/47 (89%)
 Frame = +3

Query: 126 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVE   P
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQP 62


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = +2

Query: 257 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRK 403
           K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV G GR+
Sbjct: 89  KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG-GRR 133


>Z75539-3|CAA99845.1|  228|Caenorhabditis elegans Hypothetical
           protein C54D10.10 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 462 CLSSLSTKRKRSDQDQGVHCDK*P 533
           C+SS+S    R ++D GV+CD  P
Sbjct: 24  CISSVSAINCRQEKDTGVNCDNKP 47


>Z75531-13|CAA99808.1|  228|Caenorhabditis elegans Hypothetical
           protein C54D10.10 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 462 CLSSLSTKRKRSDQDQGVHCDK*P 533
           C+SS+S    R ++D GV+CD  P
Sbjct: 24  CISSVSAINCRQEKDTGVNCDNKP 47


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 444 TLKRTPGMSPTA*PLRPNPATSTSS 370
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 444 TLKRTPGMSPTA*PLRPNPATSTSS 370
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +2

Query: 185 MEG*PFRWCISRKGHRPRESWCRTKQPNSAIR---KCVRVQLI--KNGKKVTAFVPRDGC 349
           ME   F W I  +     E W R K+ N   R   K V   L+  K  +KV   V  D  
Sbjct: 360 MEEVRFFWSIEMQCRHAVEDWKRRKRENDRKRRTDKVVTETLVQKKRRRKVEEEVEEDQM 419

Query: 350 LNHIEENDEVLVAGFGRKGH 409
            +  E+ DE    G G  G+
Sbjct: 420 EDRNEDRDEEFDHGEGCSGY 439


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 323 TAFVPRDGCLNHIEEN 370
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,612
Number of Sequences: 27780
Number of extensions: 342685
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)