Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00716
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   163   8e-41
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   163   8e-41
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    40   0.002
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.3  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   5.7  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   5.7  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   5.7  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   10.0 

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  163 bits (396), Expect = 8e-41
 Identities = 78/104 (75%), Positives = 85/104 (81%)
 Frame = +2

Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
           PF      KG    +     KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDE
Sbjct: 39  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98

Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 29/46 (63%), Positives = 37/46 (80%)
 Frame = +3

Query: 129 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+E   P
Sbjct: 17  RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 61


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  163 bits (396), Expect = 8e-41
 Identities = 78/104 (75%), Positives = 85/104 (81%)
 Frame = +2

Query: 197 PFRWCISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 376
           PF      KG    +     KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDE
Sbjct: 39  PFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98

Query: 377 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 508
           VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +3

Query: 129 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVELSSP 266
           R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+E   P
Sbjct: 17  RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQP 61


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +2

Query: 209 CISRKGHRPRESWCRTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVA 388
           C  + G  PR S    K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ 
Sbjct: 27  CPQKTGVCPRVSTRTPKKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIR 83

Query: 389 GFGRKGHAVGDIPGVRFKVVK 451
           G GR    V D PGV+   ++
Sbjct: 84  G-GR----VKDSPGVKSHCIR 99


>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
 Frame = +2

Query: 80  KWVNPEEYERRVTREPPS*TAMGGQRIQESPHGYEMEG*PFRWCISRKGHR-PRESWC-- 250
           KW++ ++ +  +     + ++   +++ E   G +M G  F W ++RKG +  +E W   
Sbjct: 280 KWLDSKKCDSVIYMAFGTMSSFKNEQLIEIAAGLDMSGHDFVWVVNRKGSQVEKEDWLPE 339

Query: 251 ----RTKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 346
               +TK     IR      LI   K +  F+   G
Sbjct: 340 GFEEKTKGKGLIIRGWAPQVLILEHKAIGGFLTHCG 375


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 396 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 289
           P PA+ST SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 WADKEFKKAHMGTKWKANPFGGASHAKG 227
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 WADKEFKKAHMGTKWKANPFGGASHAKG 227
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 305 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 466
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,837
Number of Sequences: 28952
Number of extensions: 324044
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)