Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00715
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 465 SWQNCAECSITVPAYSMTLKDKPQKMQV 548
           SW N  +CS  V AY + + DK  ++ V
Sbjct: 115 SWANYKDCSGIVSAYKIAI-DKFDRLWV 141


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 506 VFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 613
           V    Q +A K A  +   N   II+EPT     YG
Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 465 SWQNCAECSITVPAYSMTLKDKPQKMQV 548
           SW N  +CS  V AY + + DK  ++ +
Sbjct: 115 SWANYKDCSGIVSAYKIAI-DKFDRLWI 141


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 68 PFCIFNQSCYLFLKQ 24
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,163
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)