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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00714
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)                   62   4e-10
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  50   1e-06
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   44   9e-05
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)                 44   2e-04
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 41   0.001
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       38   0.006
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  38   0.010
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 37   0.013
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.018
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.018
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)                 34   0.094
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       34   0.12 
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  33   0.16 
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 32   0.50 
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   32   0.50 
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)                   31   0.87 
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)                 30   1.5  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  30   2.0  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   2.7  
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.5  
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)                     29   3.5  
SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2)              29   3.5  
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25359| Best HMM Match : p450 (HMM E-Value=0)                        29   4.7  
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)                  29   4.7  
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 28   6.2  
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)             28   6.2  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 28   6.2  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   28   6.2  
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)                     28   6.2  
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   6.2  
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                28   6.2  
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)                28   6.2  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)                    28   8.1  
SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6)              28   8.1  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   8.1  
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             28   8.1  

>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
          Length = 842

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 30/87 (34%), Positives = 50/87 (57%)
 Frame = +2

Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRH 421
           F    E++   V  DP T RSRGF F+ FK P+++D V+ +G   ++             
Sbjct: 128 FEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTTTK---- 183

Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTI 502
            KIF+GGLS+  S+++++ +FS+FG +
Sbjct: 184 -KIFIGGLSTNTSEEDMKKYFSQFGKV 209



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +3

Query: 183 RKLFVGGLSWETTDKELRDHFGAYVK 260
           +K+F+GGLS  T++++++ +F  + K
Sbjct: 183 KKIFIGGLSTNTSEEDMKKYFSQFGK 208


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
           + + N+R+GFCF++F+SE  V+ + +T    I G +V+VKRA PK
Sbjct: 138 EHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 182



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/78 (37%), Positives = 39/78 (50%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIFV 436
           E+  +++K D  TGR RGFAF+ FK     D +       I            R  KIFV
Sbjct: 54  ELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIGK------PPHLRVKKIFV 107

Query: 437 GGLSSEISDDEIRNFFSE 490
           GGL  E SD++IR +F +
Sbjct: 108 GGLKPETSDEKIREYFGK 125



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3

Query: 132 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
           G S D N       DD  KLFVGGLS+ETT + L+++F  Y
Sbjct: 12  GTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKY 52



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +2

Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTIL 505
           GK+FVGGLS E + + ++ +FS++G ++
Sbjct: 29  GKLFVGGLSYETTKESLKEYFSKYGELV 56



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/22 (54%), Positives = 20/22 (90%)
 Frame = +3

Query: 183 RKLFVGGLSWETTDKELRDHFG 248
           +K+FVGGL  ET+D+++R++FG
Sbjct: 103 KKIFVGGLKPETSDEKIREYFG 124



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 251 IREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 379
           ++EIE I   T+ ++ R RGF F+ F + +++DK+     H I
Sbjct: 130 VKEIEYI---TEHSSNRRRGFCFVSFDSEDTVDKICETQFHNI 169


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +2

Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRH 421
           F    EI+   VK DPNT RSRGF F+ FK  E    V++   H I            + 
Sbjct: 135 FTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLCEVRLPRPKE 193

Query: 422 -----GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCP 520
                 K+FVG L    ++  +  +F++FG + +   P
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIP 231


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
           FDK   + +GF F+TFESE   +    T    I  K+V+VK+A PK
Sbjct: 4   FDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 385
           D  T R RGF F+ F++  S DK      H INN
Sbjct: 5   DKATQRHRGFGFVTFESENSADKACDTQYHLINN 38


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +1

Query: 502 LRMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIG 681
           L ++M  D+  N+ KG+CF+ F +E +V+ L       + GK+V++K+A     G GG G
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKAADL--GAGGRG 190

Query: 682 TR 687
            R
Sbjct: 191 GR 192



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE-HTINNXXXXXXXXXXRHG-- 424
           ++ S+++   P  G+SR F F+ F    + ID ++   E H+I+N          R    
Sbjct: 38  DVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDDPN 96

Query: 425 --------KIFVGGLSSEISDDEIR 475
                   K+F+GGL  E S+++++
Sbjct: 97  ELAHVRTKKLFIGGLKDEHSEEDVK 121



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
 Frame = +3

Query: 174 DDDR--KLFVGGLSWETTDKELRDHFGAY 254
           DD +  KLFVGGL+ +TT++ +R +F ++
Sbjct: 3   DDSKLMKLFVGGLNEDTTEETVRAYFKSF 31



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEF 493
           K+FVGGL+ + +++ +R +F  F
Sbjct: 9   KLFVGGLNEDTTEETVRAYFKSF 31


>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
          Length = 343

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = +2

Query: 293 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIFVGGLSSEISDDEI 472
           +G+S+GFAF+  +  E+++ V+   +H I+N           + K+ +  + S I + +I
Sbjct: 79  SGKSKGFAFVRLRKKEAVESVLGRDDHVIDN-SDVSMEKQDTYRKVILKNIPSSIGESQI 137

Query: 473 RNFFSEFGTILEWRCPLTKQRTKER 547
              FS  G I     P    +TKER
Sbjct: 138 LEHFSSSGEIASVYIP-ENLKTKER 161



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 526 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 633
           KTK +RKG C +TF S     +++K  K  I G ++
Sbjct: 157 KTK-ERKGHCIVTFASVTEAFEVVKKRKHHIHGYDI 191


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
 Frame = +2

Query: 296 GRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRH-----------GKIFVGG 442
           GRSRGF F+ +++ +S+++V+   +H +++          R             KIFVGG
Sbjct: 86  GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGG 145

Query: 443 LSSEISDDEIRNFFS 487
           L+S   +++I+ +F+
Sbjct: 146 LASTTVEEDIKEYFN 160



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 526 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
           K   + +GF F+T+ES   VN++LK     +  +E++ KR+ P+ +
Sbjct: 83  KRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDE 128



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = +3

Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
           RK+F+GGL+W TT++ L+D+F  +
Sbjct: 50  RKIFIGGLNWNTTEEGLKDYFSQW 73



 Score = 35.1 bits (77), Expect = 0.054
 Identities = 14/41 (34%), Positives = 30/41 (73%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
           KIF+GGL+   +++ ++++FS++GTI++  C + K+  + R
Sbjct: 51  KIFIGGLNWNTTEEGLKDYFSQWGTIVD--CVIMKRDGRSR 89



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 EIESINVKTD-PNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 379
           E+  +++K D  N  R RGFAF+ F   E ++KV A   H I
Sbjct: 170 EVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEI 211



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 508 MEMPFDKTKNQR-KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
           +++  D+   +R +GF F+TF+++++V  +       I  K+ +VK+A P+
Sbjct: 174 VDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQ 224



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +3

Query: 183 RKLFVGGLSWETTDKELRDHFGA 251
           RK+FVGGL+  T +++++++F +
Sbjct: 139 RKIFVGGLASTTVEEDIKEYFNS 161


>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +3

Query: 150 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
           N  E    D   KLFVGGL+ ETT++ LR++F AY
Sbjct: 3   NRQENTNNDPRAKLFVGGLNRETTNETLREYFEAY 37



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRT----IGGKEVDVKRATPKPD 663
           D    + +GF ++TF   +V  ++LK         I GKEV+VKRA P+ D
Sbjct: 48  DSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPRDD 98



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK------PDGPGGIGT 684
           D+TK+  +GF F+   +E   ++L    K  + GK V+ K+ATP+        G GG G 
Sbjct: 147 DETKH--RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPRDRNSPADGGRGGYGG 204

Query: 685 R 687
           R
Sbjct: 205 R 205



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
           K+FVGGL+ E +++ +R +F  +G + +
Sbjct: 15  KLFVGGLNRETTNETLREYFEAYGELTD 42


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = +2

Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXRH 421
           F    E+ES+ +      G SR + F++FK  +   K +    H IN             
Sbjct: 100 FEQFGEVESVRIMRT-FLGYSRNYGFVLFK-DDGPSKEVLKKSHVINGKTVDVGKSR-NF 156

Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTI 502
             I+VGGL S  ++  +R  F +FG I
Sbjct: 157 RVIYVGGLPSHFTEQTVREHFKKFGVI 183



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 379
           ++  +++ TD  TG+S+G   +  + P +++K++    H I
Sbjct: 344 QVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVI 384



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
           +FVGGL+S   ++ ++++F +FG +
Sbjct: 82  VFVGGLASGTDEEGLKDYFEQFGEV 106


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 263 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           E++N+ TD  TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 675
           D+   + +GF F+TF S E++   + +   + + G+ + V  A P+ D  GG
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGDSGGG 181


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
           K+FVGG+  E  DD +R FF++FG I E
Sbjct: 11  KLFVGGIPYESGDDALRKFFAQFGEIRE 38


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 672
           F++     KGF F+TF     +  +L      + GK +D K A P+  GPG
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPR--GPG 182



 Score = 35.1 bits (77), Expect = 0.054
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = +3

Query: 168 GRDDDRKLFVGGLSWETTDKELRDHFGAY 254
           G  +D K+F+GGL++ TT+++L+++F  Y
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLKEYFSTY 225



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
 Frame = +2

Query: 305 RGFAFIVFKAPESIDKVMAAGEHTINNXXXXXXXXXXR---------------------H 421
           +GF F+ F+ P +I+ V+A   H ++           R                      
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201

Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTI 502
           GK+F+GGL+   ++++++ +FS +G +
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFSTYGMV 228


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +2

Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM------AAGEHTINNXXXXXX 403
           F ++  + S  +  D  TG+S G+AF+ +  P+  +K +           T+        
Sbjct: 47  FGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPS 106

Query: 404 XXXXRHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
               ++  +++ GL  ++ ++E+   F  FG I+
Sbjct: 107 STEIKNANLYISGLPKDMKEEEVEALFKPFGKII 140


>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIF 433
           EI    ++ DP TG ++GFAF  F +   +   +    +  I             + ++F
Sbjct: 178 EIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLNDKDIRPGRRLAICKSRSNSRLF 237

Query: 434 VGGLSSEISDDEIRNFFSEFGTILE 508
           V G+    S +EI   FS+  T L+
Sbjct: 238 VKGIPKRKSKEEIFQEFSKVTTDLQ 262


>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESI 346
           +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 483 LENVRIPTDKNTGQQRSFGFVEFSSPVSV 511


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 266 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           S+ V TD  TGR RGF F+ F + + +DK +
Sbjct: 37  SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 502 LRMEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGPGG 675
           L +++  D+   + +GF F+TF SE  ++  + K     + G+ + V +A P+ +  GG
Sbjct: 36  LSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGERGGG 94



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGPGGIG 681
           D+   + +GF F+TF S++ + D + +   +   G+ + V +A  +    GG G
Sbjct: 263 DRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQRGGGRG 316


>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
          Length = 159

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           ++  + V TD  TGR RGF F+ F + E ++K +
Sbjct: 29  DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           +I S+ V TDP  G+S+GF F+ F+ PE  ++ +
Sbjct: 134 KIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAV 166



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           I S  V  D + G S+GF F+ F +PE   K +
Sbjct: 238 ISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269


>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI-LEW 511
           K+FVGGL  +I +DEI   F  FG++ ++W
Sbjct: 345 KVFVGGLPPDIDEDEIHASFCRFGSLTVDW 374


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
           ++F+G L S + D ++   FS++GTILE
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
           +FVG +  E S+++++  FSE G ++ +R    ++  K +
Sbjct: 27  VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPK 66


>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 268

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
           +IFV G + E ++ E+R FF E+G + E
Sbjct: 9   RIFVKGFNRETTESELRAFFEEYGVVKE 36



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 RDDDRKLFVGGLSWETTDKELRDHFGAY 254
           +D  +++FV G + ETT+ ELR  F  Y
Sbjct: 4   QDISKRIFVKGFNRETTESELRAFFEEY 31


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 523 DKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
           D  KN+ KGF F++F   E     + +    TIGGK+V    A  K
Sbjct: 547 DPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK 592



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILE 508
           ++VG L  ++ D E++  FS++G+ILE
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILE 643


>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
           K+FVG +S    ++++R  FS FGTI E
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEE 242


>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESI 346
           +E +++  D  +GRSRGF F++ ++ + I
Sbjct: 34  VEKVDILRDKESGRSRGFGFVLLQSADQI 62


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
           KIF+GGL + +++D+++   S FG +
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGEL 699


>SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66  NDNFAQDITTDNQLNGNAENGGGDSQDH-NSAEAPGRDDD 182
           ND+   DI  D+  NGN  + G D+ D  N  E  G DDD
Sbjct: 20  NDDDGDDIDDDDG-NGNGNDNGDDNDDDDNDDEGNGDDDD 58


>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -2

Query: 369 SPAAMTLSIDSGALNTMKANPRDLPVFGSVFTLILSISRMLQNDHGAPYLWSPSSAHQQK 190
           SP A++  +D G     +A  +++P F    TL L +        G P  ++PSS H++ 
Sbjct: 371 SPDALSKGLDMGWGALSRAGVQEMPAFP---TLRLPLHPFASTGFGTPAFYNPSSYHRE- 426

Query: 189 VFCRHRVLGP 160
               + VLGP
Sbjct: 427 ---YYPVLGP 433


>SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAE----NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKE 230
           +ND    D   D+++NG  +    N GGD  D +  +    DDD  +   G S++  D +
Sbjct: 58  DNDGGDDDDDDDDEVNGGNDDDDFNNGGDCDDDDDDDDDDDDDDDDINKKGASYDDDDDD 117

Query: 231 LRDHF 245
             D +
Sbjct: 118 DDDGY 122


>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 520 FDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGPGGIGTR 687
           FD+   + +GF F+ ++  +    +L +     + G++V +  A+P+ +G G  G R
Sbjct: 319 FDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRTEGGGRGGGR 375


>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -3

Query: 674 PPGPSGFGVARFTSTSFPPIVLL---GVLSKSFTTCSDSNVMKQKPFLWFFVLSK 519
           P G +G G+ R++S S P        G +S S+T      V  ++ FL FFVL K
Sbjct: 383 PIGVNGSGITRYSSLSVPFYCKFSSHGDVSLSYTIKKSVPVWHEEKFLSFFVLYK 437


>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
          Length = 171

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
           G I++G +     ++EI+ FF +FGT+   R   +K+  + +
Sbjct: 98  GVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSK 139


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 189 LFVGGLSWETTDKELRDHF 245
           L+VGGL  + T+++LRDHF
Sbjct: 306 LYVGGLEGKVTEQDLRDHF 324



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
           ++VGGL  ++++ ++R+ F +FG +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGEL 330


>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKL--------FVGGLSWE 215
           NN+N   D  +DN  + N++N   ++ D+N+     R  D ++        ++ GL+WE
Sbjct: 613 NNNNNNNDNNSDNNSDNNSDNNSDNNSDNNNDNNSERGADPEIKRGKNPEGWIRGLNWE 671



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           NNDN + +   +N  N N  N   ++ D+NS      + D
Sbjct: 597 NNDNNSDNNNNNNNNNNNNNNNNDNNSDNNSDNNSDNNSD 636


>SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           NN+N   +   +N  N N  N   ++ D NS E    DDD
Sbjct: 18  NNNNNNNNNNNNNNNNNNNNNNNNNNNDDNSDEDDDDDDD 57


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 260  IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
            ++++++ TD     SRGFA++ +  PE  +K +
Sbjct: 1183 VKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 508  MEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATP 654
            +++P D+T N  +GF ++ + + E+    L       I G+E+ V+   P
Sbjct: 1186 VDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLP 1235


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESID---KVM----AAGEHTINNXXXXXXXXXXR 418
           + ++++  D  T   +G+ F+ F   E  D   KVM      G+    N           
Sbjct: 39  VVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNLDV 98

Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
              +F+G L +E+ +  + + FS FG IL+
Sbjct: 99  GANLFIGNLDTEVDEKLLYDTFSAFGVILQ 128



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 382
           +++  +  D +TG S+GFAFI F + ++ D  + A  G++  N
Sbjct: 127 LQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169


>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAE-NGGGDSQDHNS 155
           NND+   D T D+  N N + NGGG   D+N+
Sbjct: 193 NNDDDDDDDTDDDDHNNNDDDNGGGGDDDNNN 224


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  NDNFAQDITTDNQLN-GNAENGGGDSQDHNS 155
           +DNF  DI+ D  LN G A N    + ++NS
Sbjct: 335 HDNFNDDISNDGNLNGGGANNNNNKNNNYNS 365


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNXXXXXXXXX 412
           SF     +  +++K  P  G+   +AF+ F   +   K   A  G+    N         
Sbjct: 256 SFEKFGVVLDVDIKR-PARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKIGYGRS 314

Query: 413 XRHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
            +  +++VGGL   IS  E+   F  FG I
Sbjct: 315 QQTTRLWVGGLGPWISIPELEREFDRFGAI 344


>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           NN+N   +I  +N  N N  N   ++ ++N+ +    DDD
Sbjct: 112 NNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNDDDDDDDD 151


>SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 60  ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           A N+ +A+ +T +N  N N  N   ++ ++N+      DDD
Sbjct: 160 AINEKYAKIMTDNNNNNNNNNNNNNNNNNNNNNNNNNNDDD 200


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +1

Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 603
           ++++ +D  + Q KGFCF+T  +++   + ++T
Sbjct: 303 KVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNXXXXXXXXXXRHGKIFV 436
           I    +  DP +G ++GFAF  F    E+ + V       I             + ++FV
Sbjct: 178 IYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNKEIRPGKRLGVCISVANSRLFV 237

Query: 437 GGLSSEISDDEIRNFFSE 490
           G +    S  EI   FS+
Sbjct: 238 GSIPKTKSKQEILEEFSK 255


>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1084

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 264 SISRMLQNDHGAPYLWSPSSAHQQKVFCRHRVLGPQHCYDLANHRHRSL 118
           SIS +  ++ G P L+ P  A Q ++ CR + LG +    L  ++H S+
Sbjct: 498 SISSIYLHNFGPPVLFEPQKA-QPQLSCRIKTLGTRLASILIVYKHMSV 545


>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 251 IREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
           I  I+ +  K+  N G++ G AF+VFK+     K +
Sbjct: 358 IASIDLLKHKSGKNQGKNTGVAFVVFKSNNDASKAL 393


>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
          Length = 248

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPES 343
           +  + V TD  TGR RGF F+  +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESI 346
           F +   +ES+ +  D  TG  +GF +++F++ +++
Sbjct: 76  FTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAV 110


>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
          Length = 722

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 366 PAAMTLSIDSGALNTMKANPRDLPVF-GSVFTLILSISRMLQNDHGAPYLWSPSSAHQQK 190
           P+A++ +I        K  P  LPV  G+ +T   S     +N H   YLW     H  +
Sbjct: 530 PSAVSGTISPYLDIVNKYTPHGLPVVRGNEYTPHGSPVARGKNTHKTGYLWPRERIHTTR 589

Query: 189 VFCRH 175
           V C H
Sbjct: 590 VTCCH 594


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           ++DN   D   DN  NG+ ++   D  D +  +A   DDD
Sbjct: 61  DSDNNYDDNDDDNDDNGDDDDNDDDDDDDDDDDADDDDDD 100


>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 69  DNFAQDITTDNQLNGNAENGG-GDSQDHNSAEAPGRDDD 182
           D +  D   D+  + + +N G GD  D+  AE  G DDD
Sbjct: 821 DYYYDDDDDDDDDDDDGDNDGDGDGDDYGDAENYGEDDD 859


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 496 NYLRMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 669
           +YLR ++   KT++         F+S+    + +   K   G  +VD  + TP+PD P
Sbjct: 107 DYLRTKVTSSKTESDTD--VNKEFDSDDDREETIDASKNPDGSSDVDEPQETPQPDKP 162


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/30 (30%), Positives = 22/30 (73%)
 Frame = +3

Query: 66  NDNFAQDITTDNQLNGNAENGGGDSQDHNS 155
           ND+ A D++ ++ + G+ +NGG D+ ++++
Sbjct: 180 NDDSASDVSIEDIIYGDDDNGGDDNDNYDN 209


>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 293 TGRSRGFAFIVFKAPESIDKVMAAGEHTIN 382
           TG+S+GF ++ ++  ES  + + AG H I+
Sbjct: 99  TGKSKGFGYVTYENAESAQRAL-AGTHIID 127


>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 185 SVVIASWGLSTVMILRITATVLCISIKLV 99
           ++++ S G++    L ITAT+LC SI L+
Sbjct: 267 TILLESSGVTLPKALHITATILCYSISLL 295


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 123 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 239
           NGG  + D + A    R++  +LFV GL  E ++ +LR+
Sbjct: 603 NGGKSTDDASDAAYELRNEGVELFVVGLGDENSEAQLRE 641


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
           +IF G L SE++D+ +   F+++ + L+ +    K+  K +
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSK 258


>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
          Length = 691

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQD 146
           +++++A D   DN +NG+ ++GGGD  D
Sbjct: 585 DDEDYAGD--GDNDVNGDGDSGGGDDDD 610


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPES 343
           EI ++N+  D  TG+ +GF F+ ++   S
Sbjct: 4   EIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32


>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
           K+FVG +  ++   E+++FF  FG ++     +   R K+R+
Sbjct: 80  KVFVGNIGFKVRARELKDFFGYFGDVV--YAQIIMDRVKKRS 119


>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
          Length = 44

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPES 343
           EI ++N+  D  TG+ +GF F+ ++   S
Sbjct: 4   EIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32


>SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6)
          Length = 557

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
           +N+N  +DI      N   EN GG+S + N  +    DD+
Sbjct: 147 SNNNEDEDIQEVEDDNEGKENDGGESDEENDDDDEDGDDE 186


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 654  WCCTLHIDLLSTNCSFGSLKQIIYNL 577
            WC     D+L+T CS GS++ ++  L
Sbjct: 3068 WCLDCRGDILATGCSDGSVEVVVARL 3093


>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 63  NNDNFAQDITTDNQLNGN--AENGGGDSQDHN 152
           NNDN+  +   DN  N N    NG  DS D+N
Sbjct: 90  NNDNYDNNGNNDNNDNYNNYDNNGNNDSNDNN 121


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 60  ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 188
           +N+DN   D +T N  N N EN   D S  +NS +     DD K
Sbjct: 103 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 144



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 60  ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 188
           +N+DN   D +T N  N N EN   D S  +NS +     DD K
Sbjct: 289 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,324,697
Number of Sequences: 59808
Number of extensions: 456298
Number of successful extensions: 2891
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2692
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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