Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00713
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)                 28   6.8  
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
          Length = 901

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 274 HSLTIYNFSM---YCIVYLINKESTFRRFNHFTK*IDIIFYRNNKVLCVNKICSRY 116
           H+L I    +   +CI Y+     + R   HF + +++  Y N+K LCV  I   Y
Sbjct: 737 HALDISTMDLTDKHCIFYIQELLKSSRPSKHFGR-LEVKAYENDKRLCVVTIIKEY 791


>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 70  SLGTCFNRSEQTQCDYTLNIFYLH-ITPYC 156
           +L T +N +  T C++TLN  Y H +T  C
Sbjct: 5   TLTTMYNHTLTTMCNHTLNTMYNHTLTTMC 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,905
Number of Sequences: 59808
Number of extensions: 348500
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)