Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00712
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q83AM7 Cluster: Enoyl-CoA hydratase/isomerase family pr...    34   3.4  
UniRef50_Q4RN76 Cluster: Chromosome undetermined SCAF15016, whol...    33   7.9  

>UniRef50_Q83AM7 Cluster: Enoyl-CoA hydratase/isomerase family
           protein; n=4; Coxiella burnetii|Rep: Enoyl-CoA
           hydratase/isomerase family protein - Coxiella burnetii
          Length = 356

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 143 SLSVIFVN*KPKTLNYLT-DICRRMHTELVWTNTKRSLEVVI 265
           +L  I +N +PK LN LT D+CRR+H +L+   + R+++ V+
Sbjct: 18  NLGEITLN-RPKALNALTGDMCRRLHEQLLGWESDRTIKAVV 58


>UniRef50_Q4RN76 Cluster: Chromosome undetermined SCAF15016, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF15016,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 1024

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 340 SSNKAWCQCNGCLQGNQAWSPSMKFYYDL*TSLCISPN*FGMHSSTNIC 194
           S  + W  C  CLQ  Q+  PS  F+     +LCI+P+    ++  N+C
Sbjct: 17  SEQEVWAVCAECLQALQSIRPSHLFH-----TLCITPDTLAFNAHGNVC 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,797,478
Number of Sequences: 1657284
Number of extensions: 14126292
Number of successful extensions: 26243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26242
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)