Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00712
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    27   2.3  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   2.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   3.9  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   5.2  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 115 QLVVDRNSTIISLE*FEHYYLLLGSIVKDYTSKI 14
           +L VD+N  I+     E YYLLL  ++  YTSKI
Sbjct: 91  KLPVDQNRIIL----IEGYYLLLPELLPYYTSKI 120


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 536 FHGSVFGRDLVLQGR*RLIWVWLINYRQI--FGVDCFTVERSNSNSTL 673
           FHG+V G+ LVL+   +++  W ++      +    FT ++++S +TL
Sbjct: 252 FHGNVVGKFLVLEENKKIVQTWRLSSWPTGHYAEITFTFDQADSYTTL 299


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 611 YRQIFGVDCFTVERSNSNSTLFFSHAGLRPALVGLSISTRGH 736
           +R I+  +CF V+  ++ S    S+A  RP  + L++ T  H
Sbjct: 160 WRSIYEQNCFVVDDDDNPSEQPKSNALFRPNQIPLNLFTENH 201


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 650 RSNSNST-LFFSHAGLRPALVGLSISTRGHCTLLPS 754
           +SNSN++   FS +G+ PA++  S S+      +PS
Sbjct: 421 QSNSNASHSAFSFSGISPAIISPSCSSHAFVKAIPS 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,749
Number of Sequences: 5004
Number of extensions: 62093
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)