Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00712
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0229 - 27709786-27710344,27711513-27711642,27712782-277128...    31   0.77 
11_06_0291 + 22008412-22012284                                         28   7.2  
01_01_0735 + 5730783-5733320                                           28   7.2  
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001           28   9.5  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    28   9.5  

>01_06_0229 -
           27709786-27710344,27711513-27711642,27712782-27712869,
           27714070-27714363
          Length = 356

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 466 VNSPQC*GLMRFS*EIQMVGSRVLPRQCFWKRFSSSRPLKAYLGLAN 606
           V  P   G + F   ++  G R  P QCF KR   +     YLGL N
Sbjct: 81  VRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTN 127


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 DICRRMHTELVWTNTKRSLEVVIKLHA 277
           + C R+ T  V+ N K+S E + KLH+
Sbjct: 764 EFCMRIFTHAVYANPKKSTEELSKLHS 790


>01_01_0735 + 5730783-5733320
          Length = 845

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 626 GVDCFTVERSNSNSTLFFSHAGLRPALVGLSISTRGHC 739
           G+DC T E S  N+T F     +RP L G ++ T   C
Sbjct: 321 GMDCSTTECSCPNTTYFKPIDNMRPTL-GCAVETEISC 357


>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
          Length = 676

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 680 SHAGLRPALVGLSISTRG 733
           +HA LRP+L+GLS+S  G
Sbjct: 95  AHAHLRPSLLGLSVSDNG 112


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 507 GNTDGGVPRPSTAVFLEEI*FFKAAEGLFGSG*LTTARYLALTVL 641
           G  +GG    S AV + E    +AA G  G+G + TA+Y  LT L
Sbjct: 62  GEEEGGGEEESRAVVVGEPSSSEAAAGFAGNG-VRTAKYSVLTFL 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,054
Number of Sequences: 37544
Number of extensions: 382115
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)