Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00712
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.78 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   1.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 726  VDIDNPTNAGLKPA*EKKRVELELDLSTVKQSTP 625
            +D+ NP NAG K    + ++   LD + V  +TP
Sbjct: 1369 LDVSNPKNAGKKKIDVRAKLNEYLDKADVIVNTP 1402


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 367 NKYIINYVTSSNKAWCQCNGCLQG 296
           N ++ +   SS   +C+C+ CL G
Sbjct: 91  NSFLSSDSASSGNVYCKCDDCLLG 114


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 YLSTNAYRTSLD*YKEKSRGRNK 267
           Y + N+YR   + +KE+SR R +
Sbjct: 50  YKNENSYRKYRETWKERSRDRTE 72


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 YLSTNAYRTSLD*YKEKSRGRNK 267
           Y + N+YR   + +KE+SR R +
Sbjct: 50  YKNENSYRKYRETWKERSRDRTE 72


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 YLSTNAYRTSLD*YKEKSRGRNK 267
           Y + N+YR   + +KE+SR R +
Sbjct: 50  YKNENSYRKYRETWKERSRDRTE 72


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 YLSTNAYRTSLD*YKEKSRGRNK 267
           Y + N+YR   + +KE+SR R +
Sbjct: 50  YKNENSYRKYRETWKERSRDRTE 72


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 637 TVNAKYLAVVN*PDPNK---PSAALKN*ISSKNTAVEGRGTPP 518
           T N  YL   N  + ++   P A+L +  S K+  +EG  TPP
Sbjct: 720 TGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPP 762


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 163 NKYHA*RTYNIVINLEQLVV 104
           N Y++ + Y  +IN+EQ+ V
Sbjct: 316 NNYNSKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 163 NKYHA*RTYNIVINLEQLVV 104
           N Y++ + Y  +IN+EQ+ V
Sbjct: 327 NNYNSKKLYYNIINIEQIPV 346


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 618 RYLALTVLRWK 650
           RYL L ++RWK
Sbjct: 54  RYLELAMIRWK 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,789
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)