Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00712
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47270.1 68414.m05233 F-box family protein / tubby family pro...    33   0.28 
At5g07030.1 68418.m00796 aspartyl protease family protein contai...    28   7.9  

>At1g47270.1 68414.m05233 F-box family protein / tubby family
           protein contains Pfam profiles: PF00646 F-box domain,
           PF01167 Tub family; similar to Chain A, C-Terminal
           Domain Of Mouse Brain Tubby Protein Length(GI:6730158)
           [Mus musculus]; similar to phosphodiesterase (GI:467578)
           [Mus musculus]; similar to Tubby protein homolog
           (Swiss-Prot:O88808) [Rattus norvegicus]
          Length = 413

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 466 VNSPQC*GLMRFS*EIQMVGSRVLPRQCFWKRFSSSRPLKAYLGLAN*LPPD 621
           V  P+  GL+ F   ++  G R  P QCF KR  ++   + YLGL+  L  D
Sbjct: 115 VKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGD 166


>At5g07030.1 68418.m00796 aspartyl protease family protein contains
           Pfam profile:PF00026 eukaryotic aspartyl protease
          Length = 439

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 343 TSSNKAWCQCNGCL--QGNQAWSPS 275
           TSS+ AW  C+GC+    N A+SP+
Sbjct: 118 TSSDVAWIPCSGCVGCPSNTAFSPA 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,369
Number of Sequences: 28952
Number of extensions: 318058
Number of successful extensions: 526
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)