Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    28   0.055
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.17 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   4.7  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 0.055
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 97  QTISSFPIFLIGPCGLTSFAMFSFGLSQY 11
           +T++  PIF+I P  LTS   F  GL+ +
Sbjct: 494 KTLAESPIFIIIPVTLTSVCYFMIGLNSH 522


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 97  QTISSFPIFLIGPCGLTSFAMFSFGLS 17
           +T++  PIF+I P  LTS   F  GL+
Sbjct: 494 KTLAESPIFIIIPVILTSVCYFMIGLN 520


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 345 RGPNFLL*IPHHRRL 301
           R  NF L IP HRR+
Sbjct: 76  RDANFSLFIPKHRRI 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,458
Number of Sequences: 336
Number of extensions: 2253
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)