Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.024
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.7  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.5  

>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 278 KLRSPQDSSLLWCGIYNRKLGPLEPGKTTFINLTALPINTGL 403
           K +   +   LW  +YNR +G L+  K TFI+L    +N  L
Sbjct: 53  KKKKKSEQHELWASVYNRTIGKLQLNKLTFIDLCDCFLNPTL 94


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 335  LGPLEPGKTTFINLTALPINTGLQKVTGVSLVD 433
            +G    GKTT +N+ A  ++TG+  VTG  LV+
Sbjct: 917  MGESGAGKTTLLNVLAQRVDTGV--VTGDMLVN 947


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 494 IFNIHKLKLNDHNHKCVLKTNQQVTHQSLSV 402
           IF IH+LK+ND     V+K+      Q+++V
Sbjct: 65  IFYIHRLKVNDKGGMTVVKSWPLFELQNITV 95


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 467 NDHNHKCVLKTNQQVTHQSLSV 402
           ++HNH  + K N++  H+S+S+
Sbjct: 544 HNHNHDHIHKYNEKCDHESISL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,861
Number of Sequences: 5004
Number of extensions: 35290
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)