Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    28   4.9  
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743...    27   6.5  

>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 348 SRGPNFLL*IPHHRRLESC 292
           SRGPN+ + IPH   LE C
Sbjct: 727 SRGPNYAVTIPHASTLERC 745


>07_01_1156 -
           10873223-10873417,10873498-10873579,10874235-10874336,
           10874456-10874553,10874692-10874778,10874869-10875317,
           10875414-10875744,10875766-10875884,10875935-10876124,
           10876319-10876657,10876735-10876875,10876958-10877440,
           10877703-10877901,10879447-10879643
          Length = 1003

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 290 PQDSSLLWCGIYNRKLGPLEPGKTTFINLTALPINTGLQKVTGVSLVDLFLKRTYDYDH 466
           P+D +L      N +LG LE     F  L+ +PI   ++KV G+    + LK T D DH
Sbjct: 137 PKDMTLWLLNHVNTELGTLE-----FDGLS-IPIRPLIKKVIGIPEGHMRLKLTEDTDH 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,688
Number of Sequences: 37544
Number of extensions: 208842
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)