Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   3e-09
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_28250| Best HMM Match : Pinin_SDK_N (HMM E-Value=3.8)               27   6.6  

>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = +3

Query: 72  NIGKLDIVWRSNLGEKGRLQTSQLEAMALDHDDLRLTVEQIPSKVCADEAFTFKCKVVN 248
           ++GKLDIVWR++ GE+GRLQTSQL  +     DL+LTV Q+   V  +  F    K+ N
Sbjct: 214 SVGKLDIVWRTSFGERGRLQTSQLSRVIPAIADLKLTVSQMADAVPVERPFPVSLKLKN 272



 Score = 31.9 bits (69), Expect = 0.31
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 257 RTLDLILKLRSPQDSSLLWCGIYNRKLGPLEPGKTTFINLTALPINTGLQKVTGVSLVDL 436
           R +DL L +   +D +++WCG   + +G      T  I L +  + T  + ++ V   D 
Sbjct: 276 RKMDLRLLMTKSKDGAMMWCGTSGKGIGVKHGDGTIGIGLDSCVLPTRHKGISLVQTTDF 335

Query: 437 F 439
           F
Sbjct: 336 F 336


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 278 KLRSPQDSSLLWCGIYNRKLGPLEPGKTTFIN 373
           KLR+  D  +LW G++N  L PL+    T ++
Sbjct: 79  KLRAFSDKQILWAGVHNCALTPLDKSGGTDVH 110


>SB_28250| Best HMM Match : Pinin_SDK_N (HMM E-Value=3.8)
          Length = 296

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 313 VRNL*QKIRASRTRKDNIHKFNCFTNQH 396
           V+ L +K+ A +T +DN+ K  C T+ H
Sbjct: 16  VQTLNEKVSALQTEQDNLRKSICSTDNH 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,744
Number of Sequences: 59808
Number of extensions: 261703
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)