Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-5|AAL27236.1|  417|Caenorhabditis elegans Hypothetical pr...    70   1e-12
U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical pr...    70   1e-12
AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U29488-5|AAL27236.1|  417|Caenorhabditis elegans Hypothetical
           protein C56C10.7b protein.
          Length = 417

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +3

Query: 3   QFLYWLKPKENMAKEVKPHGPMRNIGKLDIVWRSNLGEKGRLQTSQLEAMALDHDDLRLT 182
           QFL+ L P +        +  + +IGKLD+ WR+++GEKGRLQTS L+ +A  + D+RL+
Sbjct: 258 QFLFCLTPAD--VHNTLGYKDLTSIGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLS 315

Query: 183 VEQIPSKVCADEAFTFKCKVVNASK 257
           VE+ P+ V   + F   C++ N S+
Sbjct: 316 VEKTPACVDVQKPFEVSCRLYNCSE 340


>U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical
           protein C56C10.7a protein.
          Length = 401

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +3

Query: 3   QFLYWLKPKENMAKEVKPHGPMRNIGKLDIVWRSNLGEKGRLQTSQLEAMALDHDDLRLT 182
           QFL+ L P +        +  + +IGKLD+ WR+++GEKGRLQTS L+ +A  + D+RL+
Sbjct: 242 QFLFCLTPAD--VHNTLGYKDLTSIGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLS 299

Query: 183 VEQIPSKVCADEAFTFKCKVVNASK 257
           VE+ P+ V   + F   C++ N S+
Sbjct: 300 VEKTPACVDVQKPFEVSCRLYNCSE 324


>AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical
           protein Y42A5A.2 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 72  NIGKLDIVWRSNLGEKGRLQ-TSQLEAMALDHDDLRLTVEQIPS 200
           N+ +  I+WR   G+K R+Q  +Q++ M  D     L   Q+ S
Sbjct: 231 NVSRAIIIWRKGFGKKYRIQYGTQVQEMLTDMQRTDLEPVQLAS 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,449
Number of Sequences: 27780
Number of extensions: 200275
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)