Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00710
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47960.1 68415.m05999 expressed protein                             53   1e-07
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    28   3.1  
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    27   9.5  

>At2g47960.1 68415.m05999 expressed protein
          Length = 442

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 25/81 (30%), Positives = 43/81 (53%)
 Frame = +3

Query: 6   FLYWLKPKENMAKEVKPHGPMRNIGKLDIVWRSNLGEKGRLQTSQLEAMALDHDDLRLTV 185
           +LY L P  +++ + K  G    +GK  I WR+NLGE GRLQT Q+    +   ++ + V
Sbjct: 277 YLYKLNPSADVSGQTKFQGS-NILGKFQITWRTNLGEPGRLQTQQILGAPVSRKEINMRV 335

Query: 186 EQIPSKVCADEAFTFKCKVVN 248
            ++P+ +  +  F     + N
Sbjct: 336 VEVPAVIHLNRPFRAYLNLTN 356


>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 352 RKDNIHKFNCFTNQHRLTESDWCV 423
           R D  +  NC+T QH+++E + C+
Sbjct: 518 RGDVCNGINCYTKQHKVSEEEACI 541


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 402 KPVLIGKAVKFMNVVFPGSRGPNFLL*IPHHRRLE 298
           +P+  G  V+FM  + PG+  PNF++  P  R+ +
Sbjct: 465 QPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQ 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,914,126
Number of Sequences: 28952
Number of extensions: 181945
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)