Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00709
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 7e-15
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 60 2e-09
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 38 0.009
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.015
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.026
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 36 0.046
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.18
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.18
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.24
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 33 0.32
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.43
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 31 0.75
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.75
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 31 0.75
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 31 0.75
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.99
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 1.3
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 30 1.7
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 1.7
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 30 2.3
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 2.3
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 30 2.3
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 30 2.3
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 4.0
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 4.0
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 29 5.3
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 78.2 bits (184), Expect = 7e-15
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +2
Query: 524 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 703
K SDGL+GLYRGF +S GII+YR YFG YDT + +L ++ +VIS+ + VT
Sbjct: 165 KTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG-EDAGVVISFVLGYGVTV 223
Query: 704 VAGIISYPFDTVR 742
AG+ SYP DT+R
Sbjct: 224 SAGLASYPIDTIR 236
Score = 74.1 bits (174), Expect = 1e-13
Identities = 45/88 (51%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 GNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXXXTSLCFV 431
GN AN IRYFPTQALNFAFKD+ K +F KKT F SL FV
Sbjct: 75 GNLANCIRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFV 131
Query: 432 YPLDFARTRLAAD--VGKGDGQREFSGL 509
Y LD+ RTRLA D VGK G+R+F+G+
Sbjct: 132 YSLDYCRTRLANDAKVGKKGGERQFNGM 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 237
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 238 LLSFW 252
LSFW
Sbjct: 69 FLSFW 73
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 210
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 211 FVRIPKEQGLLSFW 252
+R + +G+ SFW
Sbjct: 61 TMRTYRAEGIGSFW 74
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 58.8 bits (136), Expect = 4e-09
Identities = 27/62 (43%), Positives = 45/62 (72%)
Frame = +1
Query: 67 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 246
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILG 89
Query: 247 FW 252
++
Sbjct: 90 YF 91
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 165 QADRRRPALQGYRRCLRPYPQGAGSPFILAGNFANVIRYFPTQALNFAFKDKYKQ 329
Q + P +G L + G GN NVIR FP A+ FA ++YK+
Sbjct: 63 QIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +1
Query: 82 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
GG A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S W
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLW 193
Score = 32.3 bits (70), Expect = 0.43
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +2
Query: 521 SKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGM-LPDPKNTP----IVISWAI 685
S I++ +G+ YRG S+ GII Y Y+T + L KN +++ A
Sbjct: 274 SVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADPGVLVLLAC 333
Query: 686 AQTVTTVAGIISYPFDTVR 742
+T + SYP VR
Sbjct: 334 GTASSTCGQLASYPLSLVR 352
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +1
Query: 76 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
LAG ++ S+T++ P+E +K L ++ +Y+G++ A I +++G+ SF+
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTG-------QYRGLLHAASVIYQKEGIRSFY 286
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 55 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 234
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + K +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 235 GLLSFW 252
G+ +FW
Sbjct: 109 GIKAFW 114
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 76 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I +E+G+L+ +
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTILREEGILALY 212
Score = 34.7 bits (76), Expect = 0.080
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY---DTARGMLPDPKNTPIVISWA 682
+ + I + +G++ LY+G S G+ + F Y D +P TPI + +
Sbjct: 197 HALKTILREEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPICM-FV 255
Query: 683 IAQTVTTVAGIISYPFDTVR 742
A +S+PFDT+R
Sbjct: 256 NGCVAGAFAHTLSHPFDTIR 275
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 521 SKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA-IAQTV 697
+ ++K +G+ ++G GVS + Y A + ++ L DP N + S + +A T
Sbjct: 102 ASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGSMLAGTS 161
Query: 698 TTVAGIIS-YPFDTVR 742
+T+ +++ YP + ++
Sbjct: 162 STLIAMVTVYPCEVIK 177
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 31 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGI 201
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 202 VDAFVRIPKEQGLLSFW 252
D F I KE+G + +
Sbjct: 79 KDCFRTILKEEGAMGLF 95
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 76 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
L G S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ +
Sbjct: 426 LVGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALY 481
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKN------TPIVI 673
+C+ K+F S+GL G +RG ++ I A YFG + +L PK +PI +
Sbjct: 302 DCLKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELL-TPKGEHVDNLSPIRL 360
Query: 674 SWAIAQTVTTVAGIISYPFDTVR 742
++ T++ I++YP D V+
Sbjct: 361 FFS-GGIAGTLSWILTYPVDMVK 382
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQ 691
+C +I K + ++GLY+G + G+ + A FG L IS AIA
Sbjct: 196 DCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAISGAIAG 255
Query: 692 TVTTV 706
V ++
Sbjct: 256 GVQSI 260
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 73 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 249
F +GGI+ +S P++ VK Q + +Y G D +I G+ +F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAF 419
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +1
Query: 49 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGI 201
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 202 VDAFVRIPKEQGLLSFW 252
+ V + K +G+ + +
Sbjct: 70 LGTMVTLFKTEGMKTMY 86
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 527 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML--PDPKNTPIVISWAIAQTVT 700
+FK++G+ +Y+G + + + + G YD + M D +N I+ A + T
Sbjct: 76 LFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKILKKIAASITTG 135
Query: 701 TVAGIISYPFDTVR 742
+A ++ P + V+
Sbjct: 136 IMAVSVAQPTEVVK 149
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 509 GNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDT-ARGMLP 646
G ++KI++ +GL G ++G G ++ I+ Y A F Y+ +G+ P
Sbjct: 595 GGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAP 641
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 118 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 240
AP ERVK LLQVQ K+ RY+G+ D +++ + GL
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGL 216
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 37 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFV 216
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 217 RIPKEQGLLSF 249
+ KE+G++ F
Sbjct: 180 QSYKEEGMIVF 190
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQ 691
+C+ K+++S GL G ++G V+ I A YFG Y+ + + V ++ +A
Sbjct: 80 DCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYFGVYELLCDWFSNLFGSRGVATYLMAG 139
Query: 692 TVTTVAGIIS-YPFDTVR 742
V S +PFD ++
Sbjct: 140 GFAGVVSWASTFPFDVIK 157
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 533 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 643
K++G+ L++G G ++ G+ RA YF Y + ML
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 88 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLY 974
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 649
+C K+ +++G IGLYRG + G+ +A D RG+ D
Sbjct: 959 DCFFKVVRNEGPIGLYRGLLPQLLGVSPEKAIKLTTNDFVRGIFSD 1004
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLP-----DPKNTPI--V 670
+C + +FK +G+ YR + + I ++ +F Y+ AR L DPK I
Sbjct: 37 HCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKTHVIAGA 96
Query: 671 ISWAIAQTVTT 703
+ A+A +TT
Sbjct: 97 TAGAVASAITT 107
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 73 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
F A IS + A P++ K +Q + I YKG +D RI + +G+ + W
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALW 153
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 25 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIV 204
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 205 DAFVRIPKEQGL 240
D RI +E G+
Sbjct: 181 DCLRRIYREAGV 192
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 31.5 bits (68), Expect = 0.75
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIY 598
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 85 GISAAVSKTAVAPIERVKLLLQVQH 159
G+S +KT AP+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +1
Query: 73 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 240
F+ GG++ AVS+T P++ V+ +Q ++ + +Y ++ V + K+ G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGI 228
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 512 NCISKIFKSDGLI-GLYRGFGVSVQGIIIYRASYFGFYDTARGML 643
N + ++K DG+ GLYRG ++ + A FG Y+ + L
Sbjct: 217 NTLVNVYKDDGIRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFL 261
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 649
+C+ K K G++GLYRG + G + + F ++ + + D
Sbjct: 84 DCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYLKNKMAD 129
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 79 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 252
AG ++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F+
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFY 265
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 634
N ++I++ +G+ YRG+ ++ GI+ Y F Y+T +
Sbjct: 30 NAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCK 70
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 242
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 242
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 242
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 574 HTETSVQTDQTVGLEDLAD--AVSRPENSRWPSPLPTSAARRVRAKSRGYTKHREV 413
H S T+Q GL DLAD + S+P + + P + + VRA T H EV
Sbjct: 223 HPVNSDPTEQAPGLPDLADDSSASKPRRRKRKNSTPKTTRKPVRAME---TPHAEV 275
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 242
A+ S RQQ R RP GY +R R YP+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 79 AGGISAAVSKTAVAPIERVKLLLQ 150
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 511 SRPENSRWPSPLPTSAARRVRAKSRGYTK 425
+RP +SR S P+SA+RR ++SRG +
Sbjct: 220 TRPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 594 MMIPCTDTPKPLYRPIRPSDLKILLMQ--FPDRRIHA 490
+++PC P LYR +RP L+I + Q F + RI A
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQVFFTNSRIGA 623
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 471 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 349
+ RD RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -1
Query: 549 IRPSDLKILLMQFPDRRIHAGHLPYRHRRR-DGYVRSRGGTRSTERWLRRHHR-RPDYQR 376
+R + + L Q+ D+R + +R+ + R +GG R+T+ ++H R +PD +R
Sbjct: 837 VRKARREWLSDQWKDQRREKEEAARKWKRKVEERARHKGGNRATQEREKKHRRNQPDKRR 896
Query: 375 SNARTASSCQHRRGTP 328
+ R R+GTP
Sbjct: 897 TQMRIP-----RKGTP 907
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 242
A+ S RQQ R RP +GY +R R YP+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 474 RHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRRGTPACT 319
R R RD RSR R + RR R +RS R S +HR + +CT
Sbjct: 321 RSRSRDRR-RSRSRERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCT 371
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Frame = -1
Query: 510 PDRRIHAGHLPYRHRRRDGY-VRSRGGTRSTERWL--------RRHHRRPDYQRSNARTA 358
P RR + L R R R G R R +RS ER +R PD++ N T
Sbjct: 126 PVRRRRSPSLERRSRSRSGSRERRRSPSRSPERRRERSFSNSPKRERHSPDHRNGNEGTR 185
Query: 357 SSCQHRRGTPACTCP 313
Q R TPA P
Sbjct: 186 DRSQSRSPTPAKADP 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,218,158
Number of Sequences: 59808
Number of extensions: 398367
Number of successful extensions: 1599
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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