Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00709
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   151   7e-39
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   151   7e-39

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  151 bits (366), Expect = 7e-39
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +2

Query: 509 GNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIA 688
           GNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IA
Sbjct: 160 GNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIA 219

Query: 689 QTVTTVAGIISYPFDTVR 742
           Q VTTVAGI+SYPFDTVR
Sbjct: 220 QVVTTVAGIVSYPFDTVR 237



 Score =  141 bits (341), Expect = 7e-36
 Identities = 70/106 (66%), Positives = 74/106 (69%)
 Frame = +3

Query: 192 QGYRRCLRPYPQGAGSPFILAGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 371
           +G   C    P+  G      GN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 372 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGL 509
           YF            TSLCFVYPLDFARTRLAADVGK  G+REF+GL
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGL 159



 Score =  131 bits (316), Expect = 8e-33
 Identities = 59/73 (80%), Positives = 68/73 (93%)
 Frame = +1

Query: 34  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 213
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 214 VRIPKEQGLLSFW 252
           VRIPKEQG LS+W
Sbjct: 61  VRIPKEQGFLSYW 73


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  151 bits (366), Expect = 7e-39
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +2

Query: 509 GNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIA 688
           GNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IA
Sbjct: 160 GNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIA 219

Query: 689 QTVTTVAGIISYPFDTVR 742
           Q VTTVAGI+SYPFDTVR
Sbjct: 220 QVVTTVAGIVSYPFDTVR 237



 Score =  141 bits (341), Expect = 7e-36
 Identities = 70/106 (66%), Positives = 74/106 (69%)
 Frame = +3

Query: 192 QGYRRCLRPYPQGAGSPFILAGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 371
           +G   C    P+  G      GN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 372 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGL 509
           YF            TSLCFVYPLDFARTRLAADVGK  G+REF+GL
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGL 159



 Score =  131 bits (316), Expect = 8e-33
 Identities = 59/73 (80%), Positives = 68/73 (93%)
 Frame = +1

Query: 34  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 213
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 214 VRIPKEQGLLSFW 252
           VRIPKEQG LS+W
Sbjct: 61  VRIPKEQGFLSYW 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,318
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)