Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00708
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...   143   5e-33
UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n...    68   3e-10
UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4; Sophop...    62   2e-08
UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to nucleoplas...    52   2e-05
UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-...    50   5e-05
UniRef50_P91753 Cluster: Mitotic apparatus protein p62; n=3; Ech...    46   0.001
UniRef50_Q8WSV9 Cluster: Nucleolar protein; n=2; Patiria pectini...    38   0.29 

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score =  143 bits (346), Expect = 5e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 230
           MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL
Sbjct: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60

Query: 231 QEAVKLPV 254
           QEAVKLPV
Sbjct: 61  QEAVKLPV 68



 Score = 84.2 bits (199), Expect = 3e-15
 Identities = 54/114 (47%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
 Frame = +2

Query: 257 VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 436
           VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV                            
Sbjct: 70  VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVHLIGHHLLGALLEEFEDMEEMEEEMLDE 129

Query: 437 XXXXXSQFK----------------DEDNEEGEPKGKKAKCRIMPKAKLHRPRR 550
                SQFK                DEDNEEGEPKGKKAK     K K   P++
Sbjct: 130 EEGDDSQFKEDENKRKGAGKRKPNEDEDNEEGEPKGKKAKMSNNAKGKAASPKK 183


>UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n=1;
           Maconellicoccus hirsutus|Rep: Nucleoplasmin isoform
           1-like protein - Maconellicoccus hirsutus (hibiscus
           mealybug)
          Length = 176

 Score = 67.7 bits (158), Expect = 3e-10
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 7/75 (9%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWDPEAKAE-------YPRSNKLVIRQALLGPDAKPDELNVI 209
           MT+++F+G+TL  +  S+ WDP+ K +       Y   + L+++QA+LGP+AK  E+NV+
Sbjct: 1   MTEDYFWGLTLDKNKTSDLWDPDVKNDANDSTQGYRGEHTLLVKQAVLGPEAKDGEINVV 60

Query: 210 QVEAMSLQEAVKLPV 254
           +VEAM  +  VK P+
Sbjct: 61  EVEAMGYKSDVKYPI 75



 Score = 41.9 bits (94), Expect = 0.018
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 257 VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 352
           VLK G      LD+ FPD PVTF L++GSGP+
Sbjct: 77  VLKGGSQHQSLLDLLFPDPPVTFKLIKGSGPI 108


>UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4;
           Sophophora|Rep: Nucleoplasmin-like protein - Drosophila
           melanogaster (Fruit fly)
          Length = 152

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 30/68 (44%), Positives = 47/68 (69%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 230
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V   + 
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEVN--TP 56

Query: 231 QEAVKLPV 254
           +++V++P+
Sbjct: 57  KDSVQIPI 64



 Score = 43.2 bits (97), Expect = 0.008
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 257 VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 352
           VLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 66  VLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to
           nucleoplasmin-like protein; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to
           nucleoplasmin-like protein - Nasonia vitripennis
          Length = 141

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +2

Query: 257 VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 436
           +L++G++  + LD+ FPD PVTFTL++GSGPV                            
Sbjct: 33  LLEMGKTSQIILDLSFPDPPVTFTLIKGSGPVHIVGHNLLATHMDEFEDMEDEEVEVDNF 92

Query: 437 XXXXXSQF-KDEDNEEGEPKGKKAKCRIMPK 526
                 +  +DED E+ EPK KK K    PK
Sbjct: 93  DDDDDEKDPEDEDEEDDEPKKKKNKVGAPPK 123



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 165 ALLGPDAKPDELNVIQVEAMSLQEAVKLPV 254
           ALLGP+AK  ELNV+QVEAM L+  +K+P+
Sbjct: 2   ALLGPEAKAGELNVLQVEAMGLKGPIKIPI 31


>UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 156

 Score = 50.4 bits (115), Expect = 5e-05
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWD-PEAKAEY-PRSNKLVIRQALLGPDAKPDELNVIQVE 218
           M  E FYGVTLS       ++ P+   EY   S+KL+I+Q  LGP+AK  E NV+Q E
Sbjct: 1   MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAE 58



 Score = 49.6 bits (113), Expect = 9e-05
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +2

Query: 233 RSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 352
           ++ K    VLKVGE+R +R ++EFP+  VTF LVQGSGPV
Sbjct: 68  KTLKIPIAVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPV 107


>UniRef50_P91753 Cluster: Mitotic apparatus protein p62; n=3;
           Echinacea|Rep: Mitotic apparatus protein p62 -
           Lytechinus pictus (Painted sea urchin)
          Length = 411

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWDPEA--------KAEYPRSNKLVIRQALLGPDAKPDELNV 206
           M  E+F+G TLS   +   WDPE+          E   S+ L ++QA+LG +AK D+ NV
Sbjct: 1   MAKEYFWGATLSKDKKIFKWDPESDFLDDEDDDEEDSISHFLFLKQAVLGVNAKDDDRNV 60

Query: 207 IQVEAMSLQ-EAVKLPV 254
           I+VE ++   E V  P+
Sbjct: 61  IEVETINFDGETVIQPL 77


>UniRef50_Q8WSV9 Cluster: Nucleolar protein; n=2; Patiria
           pectinifera|Rep: Nucleolar protein - Asterina
           pectinifera (Starfish)
          Length = 346

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
 Frame = +3

Query: 51  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNK--------LVIRQALLGPDAKPDELNV 206
           M+ EFF+G +L+ + +   W+P    E    N         L ++QA+LG  AK  E NV
Sbjct: 1   MSKEFFWGDSLTGTKKEVKWNPSLDDEDDFDNLDSDGIQHFLFLKQAVLGATAKEGERNV 60

Query: 207 IQVEAMSLQ-EAVKLPV 254
           +++E  +   + VK P+
Sbjct: 61  VEIETENFDGDNVKQPL 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,424,959
Number of Sequences: 1657284
Number of extensions: 14486334
Number of successful extensions: 34354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34336
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)