Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00708
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    29   3.6  
At3g58050.1 68416.m06471 expressed protein                             28   6.2  
At3g14000.2 68416.m01768 expressed protein                             28   8.3  
At3g14000.1 68416.m01767 expressed protein                             28   8.3  

>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 221 HVTTRSSKTTSPVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 352
           + TT  S TT P+L +  +R V ++I  PD+   + LVQ  GPV
Sbjct: 70  NTTTSDSNTTVPLLSM-INREV-VNISLPDSNEPYGLVQIKGPV 111


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 78  TLSSSHQSETWDPEAKAEYPRSN 146
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 653 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 525
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 653 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 525
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,872
Number of Sequences: 28952
Number of extensions: 323962
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)