Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00707
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   3.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   7.2  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   9.5  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   9.5  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   9.5  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 252 RGPSLTRGHQVPAKPITNRHTGLN 181
           R P L  GH+ P K +T R  G+N
Sbjct: 453 RAPPLCEGHKEPCKYLTVRKPGIN 476


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 2   SSPRNKVIANPLTMAVQNSTTVVHMFIVLSSFLTAHN 112
           S+P ++V  NP T A     T   M+  +  F T  N
Sbjct: 342 STPASRVSRNPYTAAQPRKHTFYQMYENIEKFFTTEN 378


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 625 VLRGSP*TFGPFYRGRNLGKH 687
           VLR +P  F PF + RNL  H
Sbjct: 6   VLRKAPRAFSPFLQKRNLALH 26


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 660 LPREKPWETHTSDGSTNYFTFCVYLSWWAGRCWVILP-AYPAS 785
           +P+ K W+   ++G+T    +C+ L    G C +I    YPA+
Sbjct: 119 MPQYKDWDIKITNGNTIGLEYCLRLLVNRGDCILIEKYTYPAA 161


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 681 ETHTSDGSTNYFTFCVYLSWWAGRCW 758
           ET TSDG        VY+S  A  CW
Sbjct: 214 ETDTSDGIITKTDISVYISLCALACW 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,698
Number of Sequences: 5004
Number of extensions: 80821
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)