Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00707
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.61
10_08_0871 - 21181798-21181917,21182024-21182065,21182162-211821... 31 1.4
05_06_0285 + 26922967-26923051,26923258-26923362,26924044-269240... 30 1.9
04_04_1695 + 35433975-35437040 30 2.5
04_03_0437 + 15920806-15920811,15921257-15921429,15921515-159215... 30 2.5
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 3.3
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 3.3
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597... 29 4.3
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 4.3
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 4.3
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 4.3
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 28 10.0
02_03_0129 - 15559017-15559901 28 10.0
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 28 10.0
01_01_0445 - 3319451-3320035 28 10.0
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 307 APRTSRGRSYSAPRPQPAQRSVTDPRPPGPG 215
AP S + S P P P + PRPPGPG
Sbjct: 337 APSPSAAGAGSGPPPPPPPAAPAAPRPPGPG 367
>10_08_0871 -
21181798-21181917,21182024-21182065,21182162-21182191,
21182227-21182328,21182414-21182512,21182824-21182884,
21183447-21183568,21183673-21183758,21183880-21183964,
21184125-21184208,21184292-21184371,21184722-21184785,
21184859-21184927,21185263-21185343,21185438-21185578
Length = 421
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = +3
Query: 336 TGQVLFVTDMVYSGRHADVHTSSYLNNDPGQVQ*ESCADSRDSIHRSHSVECRLGVHTEW 515
T + +F T V+ G H D S YL++ G V E A + + ++ + LG+ T +
Sbjct: 170 TDRTVFATPEVHIGFHPDAAASFYLSHLTGHVG-EYLALTGEKLNGVDMI--ALGLATHY 226
Query: 516 KSMWYFATVAENVHTLFRDIPSLGHFYMSPWGSL 617
V E + TL D PS+ ++ +G L
Sbjct: 227 SMSDRLNLVDERLATLLTDDPSVIDTSLTHYGDL 260
>05_06_0285 +
26922967-26923051,26923258-26923362,26924044-26924072,
26925078-26925224,26926402-26926632
Length = 198
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 488 FNTMAPMNRITRIGTAFLLNLARIIVKIAASMDICMSTAIYHVGNKQNLSGSTRLLMK 315
F A + + +G A+ RI +K ++SMD +S+ +VG+K N S S L K
Sbjct: 16 FLLFAQLLQARMLGEAYYSYPHRIRIKCSSSMDCNLSSCSCYVGSKSNASFSMADLSK 73
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 304 PRTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
PR + + +AP P P Q +V PRPPGP
Sbjct: 217 PRRATLHAVAAPPPPPGQ-TVIMPRPPGP 244
>04_03_0437 +
15920806-15920811,15921257-15921429,15921515-15921559,
15923662-15923821,15924709-15925047
Length = 240
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 444 CADSRDSIHRSHSVECRLGVHTEWKSMWYFATVAENVHTLFRDIPSLGHFYMSPWGSLPA 623
C S +I R+H+V V EW S+W V E++ R++ +G SP G +
Sbjct: 21 CEASASTIRRAHAVHPINAVQLEW-SLW-SRDVEEDIIPTCREL-GIGIVAYSPLGRGFS 77
Query: 624 CIAGLTVDIWSILPREKPW 680
+WS++P + W
Sbjct: 78 YRVKSCYHMWSLVPVKIKW 96
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 316 RTRAPRTSRGRSY---SAPRPQPAQRSVTDPRPPGPG 215
R+R+P SR RSY + P +P RS D PP G
Sbjct: 1264 RSRSPSRSRSRSYDQGAGPARRPRPRSGFDVLPPATG 1300
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 304 PRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDH 203
P SR P P PA + T P PPG + DH
Sbjct: 579 PAASRRPPVHPPPPSPATTTTT-PLPPGDAQADH 611
>08_02_0424 -
16957793-16958089,16958215-16958601,16958737-16959735,
16959840-16959994,16960082-16960169,16960241-16960344,
16960424-16960646,16960839-16960923,16961006-16961397,
16962841-16963005
Length = 964
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 609 PKATCKSGPMMEYHGIKCGHFLRLLQNTTLTSIRYVRQACIQHYGSYE*NHENRHSFLTE 430
P + ++EY + FL +LQ+ +R + Q C + YE H+++ L E
Sbjct: 20 PAKLSEDDKLVEYDALLLDRFLDILQDLHGDDLRELVQECYEIAAEYEGKHDSQK--LDE 77
Query: 429 LG 424
LG
Sbjct: 78 LG 79
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 32 PLTMAVQNSTTVVHMFIVLSSFLTAHNLLRSDKQFG 139
P + +Q ST HM + +S L + +L+R +K+FG
Sbjct: 130 PSGLLLQKSTDGGHMVLSSTSLLKSRDLIRPNKEFG 165
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 304 PRTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
P +R R+ S PRP P T P PP P
Sbjct: 39 PPPARHRAPSPPRPPPPPPPPTQPAPPPP 67
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 307 APRTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
APRT+ S +P P P Q+ V P P P
Sbjct: 53 APRTAASPSPPSPAPSPQQQRVASPPPTIP 82
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.9 bits (59), Expect = 10.0
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 391 TSACRPLYTMSVTN--RTCPVPPGY**RTRAPRTSRGRSYSAPRPQPAQRS-VTDPRPPG 221
TSA P T S R P PPG R P S ++ P PQP Q+ V P PP
Sbjct: 24 TSARTPTPTPSTAGDPRRHPPPPGP--GARNPAASSAAAFRPP-PQPQQQPRVETPPPPS 80
Query: 220 PG 215
G
Sbjct: 81 YG 82
>02_03_0129 - 15559017-15559901
Length = 294
Score = 27.9 bits (59), Expect = 10.0
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -3
Query: 424 PGSLLR*LLVWTSACRPLYTMSVTNRTCP-VPPGY**----RTRAPRTSRGRSYSAPRPQ 260
PG+ +V RP Y +SV P VPPG T AP +S SAP P
Sbjct: 141 PGAQATSQMVKVVVTRP-YNISVLQVNSPIVPPGIASVSNSNTGAPPPHPAKS-SAPAPS 198
Query: 259 PAQRSVTDPRPPGPGETD 206
P++ P PG +D
Sbjct: 199 PSKSKGKKSDAPAPGPSD 216
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 286 RSYSAPRPQPAQRSVTDPRPPGPGETD 206
R + AP P P +RS P P P +D
Sbjct: 66 RHHGAPAPHPGRRSPPAPAPANPPSSD 92
>01_01_0445 - 3319451-3320035
Length = 194
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = -3
Query: 307 APRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDHQ 200
A + Y+ P P P + P PP P HQ
Sbjct: 15 AAGATANNGYTTPSPPPPPQHTPPPSPPPPAPAAHQ 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,310,778
Number of Sequences: 37544
Number of extensions: 587678
Number of successful extensions: 1845
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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