Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00707
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            36   0.038
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)                  31   0.83 
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                29   3.3  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   3.3  
SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45207| Best HMM Match : PAN (HMM E-Value=0.0013)                    29   4.4  
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_42086| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                  29   5.8  
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 29   5.8  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343 KFCLLPTWYIAVDMQMSILAAILTMILAKFSKKAVPI-LVILFIGAIVLNA 492
           + CL  +WY+A DMQ  +++ I+ +  A+F ++ + + L+ L +G+ V  A
Sbjct: 668 RLCLDWSWYLANDMQFYVISPIILIATARFGRRGLLLTLLPLLLGSFVATA 718


>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
          Length = 808

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +3

Query: 513 WKSMWYFATVAENVHTLFRDIPSLGHFYMSPWGSLPACIAGLTVDIWSILPREKPWETHT 692
           W S+++ A V   V  ++ ++    H  + P G+   C A  TV +W+++   K     +
Sbjct: 294 WSSLYHSACVW-GVE-VYPEVSDNKHAALPP-GTFLTCSADDTVRVWNVVEASKNVNDVS 350

Query: 693 SDGSTNYFTFC 725
           SDG T   T C
Sbjct: 351 SDGRTGVRTIC 361


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 307 APRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDHQ 200
           AP+ ++ R  +AP+PQP Q + T P+P     T  Q
Sbjct: 27  APKYNQPRQ-TAPKPQPHQATHTQPQPNSAAHTQPQ 61


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -3

Query: 352 NRTCPVPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGPG 215
           +R  P PP    R  AP     R  +AP P P  RS   P PP  G
Sbjct: 301 SRGAPPPPPS--RGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRG 344


>SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = +1

Query: 376 VDMQMSILAAILTMILAKFSKKAVPILVILFIGAIVLNAGLAYIPNGSQCGILQQSQKMS 555
           VD+Q  +    LT ++   SK A    V  F+   V++     I + SQ G + QS    
Sbjct: 51  VDLQKELRPISLTPVV---SKVAEGFAVDDFVKPAVMS-----ILDDSQYGAIPQSSTTM 102

Query: 556 TLYSVIFHHWATFTCRLGAVFQLV 627
            L +++ HHW+T T   GA ++ V
Sbjct: 103 ALINML-HHWSTSTDGNGAAWKYV 125


>SB_45207| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 251

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 612 CPKATCKSGPMMEYHGIKCGHFLRLLQNTTLTSIRYVRQAC 490
           CPK TC +G       +  GH+L       LTS+    QAC
Sbjct: 27  CPKGTCYAGTFSRKEHVTKGHYLLGASYRNLTSVA-SPQAC 66


>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 494 PAFNTMAPMNRITRIGTAFLLNLARIIVKIAASMDICMSTAIYHVGNKQNLSGS 333
           PA   + PM+R T+  +  L  L  +++ +   + IC ST       +QNLS S
Sbjct: 92  PALTQLLPMSRSTKFVSVDLSALCAVLMYLKTRLSICQST------GRQNLSVS 139


>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 301 RTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
           RTS  RS S PR +    SV  P PP P
Sbjct: 205 RTSTPRSRSTPRSRQEVASVPHPHPPPP 232


>SB_42086| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 250

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 319 INNLVEPDKFCLLPTWYIAVDMQMSILAAILTMILAKFSKKAVPILVILFIGAIVLNAGL 498
           +N+     K CL  T+Y+A  + +S +  ++T IL      +  +   L   AIV N  L
Sbjct: 5   VNSTALESKQCLFLTYYMAKPVTLSYVVTVVTCILTGVLSVSGVLANSLVCAAIVKNRSL 64


>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 28/92 (30%), Positives = 42/92 (45%)
 Frame = +1

Query: 355 LPTWYIAVDMQMSILAAILTMILAKFSKKAVPILVILFIGAIVLNAGLAYIPNGSQCGIL 534
           LP     VD+Q  +    LT ++   SK A   +V  F    V+      I + SQ G +
Sbjct: 179 LPKKKPVVDLQKELRPISLTPVV---SKVAEGFVVDDFAKPAVMK-----ILDDSQYGAI 230

Query: 535 QQSQKMSTLYSVIFHHWATFTCRLGAVFQLVL 630
            QS     L +++ HHW+T T   GA  + +L
Sbjct: 231 PQSSTTMALVNML-HHWSTSTDGNGAAVRTLL 261


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 349 RTCPVPPGY**RTRAPRT-SRGRS--YSAPRPQPAQRSVTDPRPPGPGETDHQ*THRAQS 179
           ++ P PP      ++P T SRG+S   S+P P P Q     P  P  G+++ Q +     
Sbjct: 333 QSSPTPPPRQSDKQSPPTPSRGQSNKQSSPTPPPRQSDKQSPPIPSRGQSNKQSSPTPPP 392

Query: 178 NYSFREQP 155
             S ++ P
Sbjct: 393 RQSDKQSP 400



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 313 TRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDH 203
           +R  R  R R+Y +P P    R  + P PP   +T++
Sbjct: 198 SRTNREERCRAYHSPLPHGTVRQQSSPPPPRDSQTNN 234



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 304 PRTSRGRS--YSAPRPQPAQRSVTDPRPPGPGETDHQ*THRAQSNYSFREQP 155
           P  SRG+S   S+P P P Q     P  P  G+++ Q +       S ++ P
Sbjct: 323 PTPSRGQSNKQSSPTPPPRQSDKQSPPTPSRGQSNKQSSPTPPPRQSDKQSP 374


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 379 RPLYTMSVTNRTCPVPPGY**RTRAPRTSR---GRSYSAPR--PQPAQRSVTDP 233
           RP+ T+S   R   +P G+  RTR P++SR   GR    PR   QP     T P
Sbjct: 189 RPITTLSPPTR---IPKGWLRRTRKPKSSRVPYGRDLIQPRYTRQPVTTRATRP 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,937,271
Number of Sequences: 59808
Number of extensions: 659549
Number of successful extensions: 1821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)