Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00707
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    33   0.29 
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    33   0.29 
At2g32850.2 68415.m04025 protein kinase family protein contains ...    32   0.51 
At2g32850.1 68415.m04024 protein kinase family protein contains ...    32   0.51 
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family...    31   1.2  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.6  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.6  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    30   1.6  
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati...    29   2.7  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    29   3.6  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    29   3.6  
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    29   4.8  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   4.8  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   6.3  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    28   8.3  

>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 352 NRTCPVPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDPRP 227
           N   P  PG+  R+  P  S+ +S   P+PQP Q  +  P+P
Sbjct: 96  NEQRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQHMMPGPQP 137


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 352 NRTCPVPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDPRP 227
           N   P  PG+  R+  P  S+ +S   P+PQP Q  +  P+P
Sbjct: 203 NEQRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQHMMPGPQP 244


>At2g32850.2 68415.m04025 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 GRSYSAPRPQPAQRSVTDPRPPGPGETD 206
           G S SA +P PA R    P PP  GE+D
Sbjct: 321 GSSKSATKPSPAPRRSPPPPPPSSGESD 348


>At2g32850.1 68415.m04024 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 650

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 GRSYSAPRPQPAQRSVTDPRPPGPGETD 206
           G S SA +P PA R    P PP  GE+D
Sbjct: 321 GSSKSATKPSPAPRRSPPPPPPSSGESD 348


>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
           protein 
          Length = 846

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -3

Query: 340 PVPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDP-----RPPGPGETDHQ*THRAQSN 176
           P PP +    +AP+    ++   P P   Q S  DP     RPP PG++ +Q  H+    
Sbjct: 784 PPPPYHTPHGQAPQPYPPQAQQQPHPSWQQGSYYDPQGQQPRPPYPGQSPYQPPHQGGGY 843

Query: 175 Y 173
           Y
Sbjct: 844 Y 844


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 310 RAPRTSRGRSYSA-PRPQPAQRSVTDPRPPGP 218
           R P   R   YSA P P+PA   V  PRP  P
Sbjct: 78  RPPTPDRPNPYSASPPPRPASPRVASPRPTSP 109


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 310 RAPRTSRGRSYSA-PRPQPAQRSVTDPRPPGP 218
           R P   R   YSA P P+PA   V  PRP  P
Sbjct: 77  RPPTPDRPNPYSASPPPRPASPRVASPRPTSP 108


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 313 TRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDHQ*THRAQSNYSFREQP 155
           T+ P  S   SY AP   P Q       P    ET    T  ++SN S  + P
Sbjct: 700 TQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAP 752


>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC1) strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 967

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 609 PKATCKSGPMMEYHGIKCGHFLRLLQNTTLTSIRYVRQACIQHYGSYE*NHENRHSFLTE 430
           P    +   ++EY  +    FL +LQ+     +R   Q   +H   YE  HE +   L E
Sbjct: 21  PGKVSEDDKLVEYDALLLDRFLDILQDLHGEDLRETVQELYEHSAEYEGKHEPKK--LEE 78

Query: 429 LG 424
           LG
Sbjct: 79  LG 80


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 316 RTRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGPGETDHQ*THRAQSNYSFREQP 155
           + RA   SR RS S  RP+   RS + PRP  P  +  +   R++S  S  E P
Sbjct: 18  KERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGR--SRSRSRGSEVENP 69


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 459 DSIHRSHSVECRLGVHTEWKSMWYFATVAENVHTL-----FRDIPSLGH 590
           DS+ ++ S++C+ GV ++    W    +A  V  L     FRD+ SL H
Sbjct: 81  DSLIKTFSLKCKTGVDSDHVDRWICNVLARGVSDLDLFIDFRDLYSLPH 129


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 316 RTRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGPGET 209
           + RA   SR RS S  RP+   RS + PRP  P  +
Sbjct: 18  KERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRS 53


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 355 TNRTCPVPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
           TN T P PP        P  S   S + P PQP+  +   P PP P
Sbjct: 49  TNSTSP-PPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSP 93


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 388 SACRPLYTMSVTNRTCP-VPPGY**RTRAPRTSRGRSYSAPRPQPAQRSVTDPRPPGP 218
           SA  PL     T    P  PPG   +T  P      + + P P P ++    P PP P
Sbjct: 356 SASTPLTPGQFTTANAPPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPP 413


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 271 PRPQPAQRSVTDPRPPGPGETDHQ*THRAQSNYSFREQP 155
           P P P  R+ T  +PP P   +H+  HR  +  +   QP
Sbjct: 90  PPPLPENRAATAGQPPSPSPDNHR-HHRRTTTAAVAGQP 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,977
Number of Sequences: 28952
Number of extensions: 450939
Number of successful extensions: 1324
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)